|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-1726 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces ~7x3mm. Tubules badly autolyzed
|
Acceptable
|
 |
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-1826 |
Kidney - medulla
|
PAXgene |
3
|
2 pieces ~10x8mm, LDACC NOTE: ~35-40%% of one aliquot is cortex, ensquared
|
Acceptable
|
 |
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-1926 |
Testis
|
PAXgene |
3
|
2 pieces, 8x6mm. Spermatogenesis is present but badly autolyzed
|
Acceptable
|
 |
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2026 |
Prostate
|
PAXgene |
3
|
2 pieces ~8x7mm. Pattern of glandular hyperplasia but mucosa severely autolyzed
|
Acceptable
|
 |
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2126 |
Urinary bladder
|
PAXgene |
3
|
6 pieces ~8x4mm; urothelium completely sloughed, half the pieces have layer of fat up to 50% of total thickness of specimen; representative fatty areas encircled
|
Acceptable
|
 |
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces ~8x2mm, mucosa badly autolyzed
|
Acceptable
|
 |
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2326 |
Stomach
|
PAXgene |
3
|
6 pieces ~8x1.5mm, mucosa up to 50% thickness of some pieces but all badly autolyzed
|
Acceptable
|
 |
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2426 |
Pancreas
|
PAXgene |
3
|
2 pieces ~8x6mm, severely autolyzed/saponified. LDACC NOTE: ~80% of one aliquot is fat, encircled
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces, ~7x2mm. Squamous epithelium is ~2-3% thickness
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, ~7x6mm
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0326 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, ~10x5mm. Interstitial fat is ~15% of specimens
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~4mm d. Discontinuous rim of fat around both, ~0.2-3mm
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, ~2mm d. Good clean specimens
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0626 |
Aorta
|
PAXgene |
1
|
6 pieces, ~8x1.5mm
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0726 |
Heart
|
PAXgene |
1
|
2 pieces ~8x6mm. Minimal interstitial fibrosis, up to ~1mm layer of epicardial fat along edge of both
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0826 |
Coronary artery
|
PAXgene |
1
|
2 pieces, ~2.2mm d. ~1x1mm nubbin of fat on one aliquot, encircled
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-0926 |
Lung
|
PAXgene |
2
|
2 pieces, ~7x5mm. Minimal congestion
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-1026 |
Liver
|
PAXgene |
2
|
2 pieces, ~7x7mm
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-1126 |
Spleen
|
PAXgene |
3
|
2 pieces ~8x5mm. Moderate congestion, poorly preserved
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-1226 |
Pancreas
|
PAXgene |
3
|
2 pieces, ~10x7mm. ~30% interstitial or adherent fat, marked saponification and autolysis
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces ~5x1.5mm. Squamous mucosa sloughing, ~1% of thickness where present
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-1426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~7x2.5mm
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-1526 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, ~7x6mm
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-1626 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces ~8x5mm. Minute foci of atrophic TLDUs in one aliquot, encircled, mucosa poorly preserved
|
Acceptable
|
 |
|
GTEX-SN8G
|
51-60
|
Female
|
GTEX-SN8G-1726 |
Adrenal glands
|
PAXgene |
3
|
2 pieces ~15x5mm. Mainly cortex, minute focus of badly autolyzed medulla visible in one aliquot, encircled. ** Gross impression of abnormality noted; no histologic abnormality seen**
|
Acceptable
|
 |