GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces up to 11x9mm; central defects from poor fixation
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, 4 with mucosa, 2 without, mucosa up to 0.4mm; up to 7.5x2mm
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 7.7x4 mm
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-1326 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, ~8x7mm. No adrenal; all fat;
|
Unacceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-1426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to ~8x3 mm; mucosa up to 0.4mm
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-1526 |
Stomach
|
PAXgene |
1
|
6 pieces, one not well stained/preserved; mucosa 0.8 mm; ~7x3mm
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-1626 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, one 14 x 6mm with moderate fragmentation
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-1726 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; 40% of aliquot is fat and stroma; nerve is ~1.2mm
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-1826 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 1 with 1 mm artery and vein; 1 with 1 mm artery; each with 20% fat and stroma
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-1926 |
Urinary bladder
|
PAXgene |
1
|
6 pieces up to 9x4 mm; all with epithelium up to 0.1 mm thick
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-2026 |
Uterus
|
PAXgene |
1
|
2 pieces, 1, 6x6 mm with secretory endometrium 2mm thick; 1, 14x7.7 mm without endometrium
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-2126 |
Cervix - ectocervix
|
PAXgene |
1
|
4 pieces up to 11.5x4mm, all with good squamous surface up to 0.4 mm thick
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-2226 |
Cervix - endocervix
|
PAXgene |
1
|
4 pieces up to 15x3.4 mm 2 with endocervix, 1 with endometrium, 1 without epithelium
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-2326 |
Fallopian tube
|
PAXgene |
0
|
2 pieces up to 5x3 mm; good epithelium
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-2426 |
Ovary
|
PAXgene |
0
|
2 pieces up to 13x8 mm; recent corpora lutea, no ova; 1 with 60% vessels and stroma
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-2526 |
Vagina
|
PAXgene |
1
|
6 pieces up to 7x3.5 mm; good epithelial preservation ~0.3 mm thick
|
Acceptable
|
 |
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-2626 |
Thyroid gland
|
PAXgene |
1
|
2 pieces up to 10.5x6.5 mm
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0126 |
Artery - tibial
|
PAXgene |
1
|
2 ~1.3x 0.8mm aliquots; good clean small muscular artery specimens
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0226 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 ~9x6mm aliquots, few atrophic ductal structures; one aliquot with extensive ‘contaminating’ skeletal muscle (?pectoralis)
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0326 |
Aorta
|
PAXgene |
1
|
6 ~9x1.5mm pieces, patchy atherosis
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0426 |
Coronary artery
|
PAXgene |
1
|
2 ~5.5xmm aliquots, 20% circumferential calcified atherosclerotic luminal occlusion, ? hemorrhagic dissection
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0526 |
Heart
|
PAXgene |
1
|
2 ~9x7mm aliquots. Extensive interstititial fibrosis/infarcts.
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0626 |
Colon, transverse
|
PAXgene |
3
|
6 ~9x2mm pieces. Mucosa sloughed in >50%; where present, badly autolyzed, score three, ~10% of thickness. Areas of poor/under-fixation
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0726 |
Kidney - medulla
|
PAXgene |
3
|
2 ~10x8mm aliquots. Contaminant glomeruli in one aliquot, ~40%. Chronic/fibrosing intersitital nephritis; focal areas of ‘thyroidization’.
|
Acceptable
|
 |
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0826 |
Kidney - cortex
|
PAXgene |
3
|
6 ~6x5mm pieces. Chronic interstitial nepthritis. Both glomeruli and tubules show severe autolysis
|
Acceptable
|
 |