GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-0326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 ~10x7.5mm pieces, ~50% adipose. Rare ductal elements
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-0426 |
Liver
|
PAXgene |
2
|
2 ~9x8mm pieces
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-0526 |
Spleen
|
PAXgene |
3
|
2 ~10x9mm pieces. Under fixed.
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-0626 |
Pancreas
|
PAXgene |
2
|
2 ~9x7.5mm pieces. Islets more autolyzed; ~10-15% partly saponified fat
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-0726 |
Lung
|
PAXgene |
2
|
2 ~9.5x6mm pieces. Moderate congestion.
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-0826 |
Coronary artery
|
PAXgene |
1
|
2 ~3x2mm pieces, fat and myocardium; 1 minute vessel less than 10% of one aliquot
|
Unacceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-0926 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~7x7mm pieces. Interstitial fat is ~10% of both aliquots. Areas of under-fixation with holes/tears
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1026 |
Heart
|
PAXgene |
2
|
2 ~7x6mm pieces. Patchy interstitial fibrosis
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1126 |
Nerve - tibial
|
PAXgene |
2
|
2 ~ 4x3mm pieces, each ~10% fat intermingled
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1226 |
Thyroid gland
|
PAXgene |
2
|
2 ~9x8mm pieces, extensive regressive change? “burned-out” Hashimoto’s dz
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1326 |
Artery - tibial
|
PAXgene |
2
|
2 ~ 4x3mm pieces; 50% of aliquot is fat/connective tissue
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1426 |
Aorta
|
PAXgene |
1
|
6 ~ 9.5x1.5mm pieces
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1526 |
Esophagus - muscularis
|
PAXgene |
2
|
6 ~9x3.5mm pieces. Areas of under-fixation, tears and holes
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 ~6x2mm pieces. Squamous mucosa is ~10% of specimen thickness1
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1726 |
Adrenal glands
|
PAXgene |
3
|
2 ~7x3mm pieces, one fragmented. ~15% fat, saponified
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1826 |
Kidney - cortex
|
PAXgene |
2
|
6 ~8x3mm pieces. Glomeruli present in 5 of 6 aliquots. Autolysis worse in tubules.
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1926 |
Kidney - cortex
|
PAXgene |
2
|
2 ~9x8mm pieces. Cortex, not medulla; numerous glomeruli1
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2026 |
Urinary bladder
|
PAXgene |
2
|
6 ~8x3.5mm pieces. Urothelium completely sloughed
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2126 |
Cervix - ectocervix
|
PAXgene |
2
|
5 ~ 5x3mm pieces, 2 with partially sloughed squamous mucosa, ~5-10% of aliquot thickness
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2226 |
Cervix - endocervix
|
PAXgene |
2
|
2 (stroma); 4 ~5x3mm pieces; no visible mucosal/glands
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2326 |
Fallopian tube
|
PAXgene |
3
|
2 ~ 4mm d. pieces. Mucosa totally autolyzed/sloughed
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2426 |
Uterus
|
PAXgene |
3
|
2 ~11x3.5mm pieces, mainly myometrium. 1 aliquot has a ~ 3x1.6mm focus of autolyzed atrophic glands/stroma
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2526 |
Stomach
|
PAXgene |
2
|
2-3 (mucosa);1-2 (muscularis), 6 ~10x2mm pieces. Mucosa is ~25% of aliquot thickness; near-total autolysis
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2626 |
Colon, transverse
|
PAXgene |
2
|
3 (mucosa); 1-2 (muscularis); 6 ~ 6.5x1.5mm pieces. Epithelium totally autolyzed; mucosa partially sloughed
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2726 |
Vagina
|
PAXgene |
1
|
6 ~ 7.5x1.5mm pieces. Squamous mucosa, partially sloughed, on 3; less than 1% of specimen thickness
|
Acceptable
|
 |