GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-0626 |
Lung
|
PAXgene |
1
|
2 ~11x8mm aliquots. Dense conolidation, pneumonia, fibrosis, pending glass review
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-0726 |
Ovary
|
PAXgene |
1
|
2 ~ 15x11mm aliquots. Corpora albicantia and an occasional ovum noted.
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-0826 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~9x3mm pieces
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-0926 |
Stomach
|
PAXgene |
1
|
6 ~7.5x2mm pieces of gastric mucosa/submucosa; with mucosa ~ 30-50% of thickness. Can be used for GTEx once re-labeled correctly. No notable Barrett’s metaplasia. This is either a mis-sample or hi atal hernia.
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1026 |
Stomach
|
PAXgene |
2
|
6 ~7.5x3mm pieces. Mucosa is fairly well preserved, ~20-25% of thickness
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1126 |
Colon, transverse
|
PAXgene |
1
|
6 ~8.5x3m pieces. Mucosa is well-preserved, ~ 15% of thickness
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1226 |
Urinary bladder
|
PAXgene |
2
|
6 ~10x3mm pieces. Urothelium partially sloughed, variably preserved, 1-2 % of thickness
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1426 |
Vagina
|
PAXgene |
2
|
6 ~8x2.5mm pieces. Squamous mucosa is ~ 5-7% of thickness
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1526 |
Cervix - ectocervix
|
PAXgene |
1
|
2 aliquots ~ 12.5x3mm. Squamous mucosa (keratinizing in foci) is 3-5% of thickness; good specimens
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1626 |
Uterus
|
PAXgene |
1
|
2 aliquots ~10x3mm. Trace minute glands, adenomyosis.
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1726 |
Cervix - endocervix
|
PAXgene |
1
|
2 ~10.5x2.2mm aliquots, each ~40 glandular tissue. One aliquot is more upper endo-cervix/lower uterine segment
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1826 |
Adipose tissue
|
PAXgene |
1
|
2 ~8.5x6mm aliquots. Areas of under/poor fixation centrally
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1926 |
Skin, leg
|
PAXgene |
0
|
6 pieces, ~8x3mm. Squamous epithelium is ~1.5-2% of thickness
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-2026 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~9x7mm aliquots, one fragmented. Poorly fixed.
|
Acceptable
|
 |
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-2226 |
Artery - tibial
|
PAXgene |
1
|
2 ~4x2mm aliquots. ~50% of aliquots are peri-arterial connective tissue, fat, small vessels
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0126 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, 7x3 mm, cortex
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0226 |
Spleen
|
PAXgene |
1
|
2 pieces, 8x7 & 8x6 mm, no congestion
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0326 |
Lung
|
PAXgene |
1
|
2 pieces, 11x6 & 9x9 mm; no inflammation
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0426 |
Pancreas
|
PAXgene |
1
|
2 pieces, 8x8 & 10x8 mm, 10-20% embedded fat
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0526 |
Stomach
|
PAXgene |
1
|
7 pieces up to 10x4 mm; mucosa ~1 mm thick
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
5 pieces ~7x3mm, all with good epithelium
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
5 pieces up to 7x5mm
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0826 |
Urinary bladder
|
PAXgene |
2
|
6 pieces up to 9.6x4.8 mm; 3 have mucosa but largely sloughed, 3 only muscularis
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0926 |
Fallopian tube
|
PAXgene |
1
|
2 pieces ~6x3 & 3x2.8; needs re-labeling
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1026 |
Cervix - ectocervix
|
PAXgene |
1
|
2 pieces ~8x2.6mm; epithelium folded
|
Acceptable
|
 |