GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-1926 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; <5% fibrous content
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-2026 |
Skin, leg
|
PAXgene |
1
|
6 pieces; deep fat not trimmed on half pieces; 10% dermal fat
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-2126 |
Muscle, skeletal
|
PAXgene |
1
|
3 pieces; focal (5%) admixture with dense collagen (tendon) on 2 pieces
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-2226 |
Uterus
|
PAXgene |
1
|
2 pieces; not uterus; looks like bladder and fat tissue
|
Unacceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-2326 |
Vagina
|
PAXgene |
1
|
6 pieces; papillary surface on some pieces
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-2426 |
Ovary
|
PAXgene |
1
|
2 pieces; atrophic; ovarian parenchyma comprises 20%
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0126 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces; hair bearing skin with 20% to 40% dermal fat
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0226 |
Skin, leg
|
PAXgene |
1
|
6 pieces; benign keratosis and 20% to 40% intradermal fat and empty spaces, ~34 microns thick epidermis
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; mature adipose tissue with fibrovascular component and one piece with vessel wall (outlined) up to ~3mm in thickness
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0426 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces; ~20% internal fat
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0526 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; ~40% internal/external fat
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0626 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; thin rim of adherent adventitia
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0726 |
Lung
|
PAXgene |
1
|
2 pieces; severe congestion and intraalveolar hemorrhage, focal pleural coverage with fibrosis and anthracotic pigmentation (arrows), a few small bronchi with sloughed mucosa (outlined)
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0826 |
Thyroid gland
|
PAXgene |
2
|
2 pieces; small ~ 1mm in diameter well circumscribed likely adenomatous nodule (outlined), some interstitial fibrosis, variably sized follicles
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-0926 |
Atrial appendage
|
PAXgene |
1
|
2 pieces; one piece with ~60% internal fat and fibrosis
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1026 |
Heart
|
PAXgene |
1
|
2 pieces; interstitial fibrosis and scarring (rep outlined), fatty degeneration (arrows)
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1126 |
Coronary artery
|
PAXgene |
1
|
2 pieces; poorly oriented specimen consists of adipose tissue (outlined) and fragmented vascular wall with possible fibrous plaque (arrows)
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1226 |
Omentum
|
PAXgene |
1
|
2 pieces; lobulated mature adipose tissue with minimal fibrovascular component
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1326 |
Liver
|
PAXgene |
1
|
2 pieces; fatty degeneration, fibrosis consistent with cirrhosis, and inflammation
|
Unacceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1426 |
Aorta
|
PAXgene |
1
|
6 pieces; evolving atherosclerotic plaque (arrow), attached ~1mm congested adventitia
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1526 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; renal cortex with patchy interstitial fibrosis and hyalinized glomeruli (rep arrowed)
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1626 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; moderately autolyzed adrenal cortex and medulla, ~40% and 50% internal/external fat (outlined)
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1726 |
Spleen
|
PAXgene |
2
|
2 pieces; congestion
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1826 |
Testis
|
PAXgene |
1
|
2 pieces; Sertoli cells, reduced/absent spermatogenesis, increased Leydig cells, c/w atrophy, congestion
|
Acceptable
|
 |
GTEX-1GZ2Q
|
41-50
|
Male
|
GTEX-1GZ2Q-1926 |
Ileum
|
PAXgene |
3
|
6 pieces; severe autolysis of mucosa, muscularis (not target) is better preserved, lack of target lymphoid aggregates
|
Unacceptable
|
 |