GTEX-PX3G
|
21-40
|
Female
|
GTEX-PX3G-2426 |
Ovary
|
PAXgene |
0
|
2 pieces, 15x2mm & 11x3 mm; ova and corpora
|
Acceptable
|
 |
GTEX-PX3G
|
21-40
|
Female
|
GTEX-PX3G-2526 |
Vagina
|
PAXgene |
1
|
6 pieces, up to 11x4 mm
|
Acceptable
|
 |
GTEX-PX3G
|
21-40
|
Female
|
GTEX-PX3G-2626 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 6.6x8.8 mm & ~6mm
|
Acceptable
|
 |
GTEX-PX3G
|
21-40
|
Female
|
GTEX-PX3G-3026 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 2.8mm diameter; 30% atherosclerotic plaque & 30% adipose in one; 20% plaque & <5% adipose in other
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0126 |
Skin, leg
|
PAXgene |
1
|
6 ~8x2.5mm pieces. Squamous epithelium is ~1--2% of thickness
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0226 |
Adipose tissue
|
PAXgene |
1
|
2 ~9x6mm aliquots, fragmented
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 ~9x7mm aliquots, ~ 70% ductal/lobular units, good specimen
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0426 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~7x6.5mm aliquots, ~20% interspersed fat
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0526 |
Artery - tibial
|
PAXgene |
1
|
2 ~2mm d aliquots, clean specimens
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0626 |
Nerve - tibial
|
PAXgene |
2
|
2 ~6x4.5mm aliquots, both with ~6mm rim of fat.
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0726 |
Heart
|
PAXgene |
1
|
2 ~7.5x6.5 mm aliquots, areas of poor/under-fixation
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0826 |
Thyroid gland
|
PAXgene |
2
|
2 ~8x6.5mm aliquots
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-0926 |
Aorta
|
PAXgene |
1
|
6 ~9x1.5mm pieces, minimal atherosis
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1026 |
Lung
|
PAXgene |
2
|
2 ~8x6.5mm aliquots, areas of interstitial fibrosis/inflammation
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1126 |
Liver
|
PAXgene |
1
|
2 ~9x7.5mm aliquots, patchy mixed micro-and macro-vesicular steatosis, ~25%
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1226 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~7x2.5mm pieces
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 ~7x1mm pieces. Squamous mucosa focally sloughing, ~ 40-50% of thickness
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1426 |
Spleen
|
PAXgene |
3
|
2 8x7.5mm aliquots. Appears under-fixed
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1526 |
Pancreas
|
PAXgene |
2
|
2 ~10x7mm aliquots, relatively clean, mild peripancreatic saponification
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1626 |
Adrenal glands
|
PAXgene |
3
|
2 aliquots ~ 20x7mm (nearly full sections), all cortex but generally badly autolyzed
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1726 |
Kidney - cortex
|
PAXgene |
3
|
6 ~6.3x3mm pieces. Tubules badly autolyzed
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1926 |
Stomach
|
PAXgene |
3
|
2 aliquots, ~8.5x2.5mm. Mucosa better preserved than usual for an autopsy, ~50% of thickness
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces ~ 8x1.5mm. Mucosa badly autolyzed, 10-25% of thickness
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2126 |
Urinary bladder
|
PAXgene |
2
|
6 ~8 x 4mm pieces, urothelium 95% sloughed. Wall is ~50% fat/50%detrussor muscle
|
Acceptable
|
 |
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2226 |
Vagina
|
PAXgene |
1
|
6 ~9x4.5mm pieces. Squamous mucosa visible on 3/6, ~5% of thickness
|
Acceptable
|
 |