GTEX-PLZ6
|
21-40
|
Male
|
GTEX-PLZ6-1226 |
Testis
|
PAXgene |
1
|
2 pieces ~10mm sq; >60% atrophic, sclerotic tubules; remainder with minimal spermatogenesis. Capsule partially present.
|
Acceptable
|
 |
GTEX-PLZ6
|
21-40
|
Male
|
GTEX-PLZ6-1326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 10.5x8 & 11.5x7 mm. No fixation artifacts. Adherent vessel, 1 x 3 mm
|
Acceptable
|
 |
GTEX-PLZ6
|
21-40
|
Male
|
GTEX-PLZ6-1426 |
Skin, leg
|
PAXgene |
1
|
6 ~10x3.7 mm (maximum) pieces. Fragmented dermis in 2 pieces (poor fixation)
|
Acceptable
|
 |
GTEX-PLZ6
|
21-40
|
Male
|
GTEX-PLZ6-1526 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces ~9x8 & 6x7 mm pieces, large areas (>50%) with tears in the larger piece, probable poor fixation
|
Acceptable
|
 |
GTEX-PLZ6
|
21-40
|
Male
|
GTEX-PLZ6-1626 |
Artery - tibial
|
PAXgene |
1
|
2 pieces of 2 muscular arteries about 2mm in diameter; calcified deposits in intima; 10% adherent fat in one piece
|
Acceptable
|
 |
GTEX-PLZ6
|
21-40
|
Male
|
GTEX-PLZ6-1726 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, ~4 mm fat/connective tissue <10% of total specimen
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, 6x8mm; moderately congested
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0226 |
Coronary artery
|
PAXgene |
1
|
2 pieces, arteries 2x1mm make up about 15% of specimen with abundant pericardial fat and myocardium
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0326 |
Heart
|
PAXgene |
1
|
2 pieces, 7x5 & 7x8mm; includes papillary muscles
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0426 |
Aorta
|
PAXgene |
1
|
6 pieces, 10x1.3mm
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0526 |
Lung
|
PAXgene |
1
|
2 pieces, ~10x8 & 7x7mm; bronchopneumonia and alveolar desquamation
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~8x3mm; 5 of the 6 have major muscle fragmentation/tears;
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0726 |
Esophagus - mucosa
|
PAXgene |
0
|
4 pieces, ~4x4mm; mucosa=~0.3mm thick. Well preserved mucosa
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0826 |
Stomach
|
PAXgene |
1
|
6 pieces, ~8x2.5mm, mucosa 0.8mm, mild chronic gastritis, well-preserved fundic mucosa
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-0926 |
Urinary bladder
|
PAXgene |
2
|
6 pieces, ~5 x 7mm, mucosa partly sloughed
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-1226 |
Uterus
|
PAXgene |
1
|
2 pieces ~8 x 7mm; No endometrium , only myometium
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-1326 |
Fallopian tube
|
PAXgene |
1
|
2 pieces, ~7x4 & 4x4mm with abundant well preserved epithelium
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-1426 |
Ovary
|
PAXgene |
1
|
2 pieces, ~8x8 & 13x5mm; a few primordial follicles; probable old endometriosis
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-1526 |
Cervix - ectocervix
|
PAXgene |
1
|
5 pieces, ~6x5mm, 2 ectocervix, 2 without epithelial lining; 1 3x1mm fibroadipose piece
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-1826 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, ~6x3.5mm, poorly oriented with only minimal mucosa visible
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-1926 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, ~8x8 & 10x10mm, larger piece has extensive fracture artifact, probable fixation effect
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-2026 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, ~1.8x1mm, ~50% fat and blood vessels
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-2126 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, ~2 x 0.6mm, normal artery
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-2226 |
Skin, leg
|
PAXgene |
0
|
6 pieces, ~8x3mm. focal dermal hemorrhages
|
Acceptable
|
 |
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-2326 |
Adipose tissue
|
PAXgene |
0
|
2 large pieces, 9x11 and 10x11 mm. Both with large empty central areas of under-fixation.
|
Acceptable
|
 |