GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, glomeruli present in all sections
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1126 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, atrophic ductal/lbular elements, fibrocystic changes
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1226 |
Gastroesophageal junction
|
PAXgene |
3
|
6 pieces, muscularis, patchy areas of infarction/total autolysis
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, all muscularis
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1426 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces, near- total autolysis/mucosa completely sloughed
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1526 |
Stomach
|
PAXgene |
3
|
6 pieces, mucosa totally autolyzed
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, epithelial component of mucosa completely sloughed, some lamina propria elements remain
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1726 |
Ileum
|
PAXgene |
3
|
6 pieces, mucosa autolyzed, ~15% residual lymphoid aggregates present, delineated
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1826 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, ~sqaumous epithelium is ~60 microns; adherent fat up to 1-1.5mm on sections, rep foci delineated
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-1926 |
Pancreas
|
PAXgene |
2
|
2 pieces, pancreatic tissue and ~40% adherent fat (delineated). Islets delineated and ensquared. May be used as pancreas once labeling corrected as this is a GTEx target tissue.
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2026 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, all muscularis
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2126 |
Adipose tissue
|
PAXgene |
0
|
2 pieces
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2226 |
Nerve - tibial
|
PAXgene |
0
|
3 pieces, discontinuous rim of fat, up to ~1mm, delineated
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2326 |
Skin, leg
|
PAXgene |
0
|
6 pieces, squamous epithelium is 40-50 microns
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2426 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces ~10% adherent/interstitial fat, rep delineated
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2526 |
Artery - tibial
|
PAXgene |
0
|
3 pieces, generally clean specimens
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2626 |
Pituitary gland
|
PAXgene |
1
|
2 pieces, 90% adenohypophysis/ 10% neurohypophysis
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2726 |
Brain - cortex
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-1128S
|
61-70
|
Female
|
GTEX-1128S-2826 |
Brain - cerebellum
|
PAXgene |
1
|
2 pieces, Purkinje cells, no evidence of hypoxic damage
|
Acceptable
|
 |
GTEX-113IC
|
61-70
|
Male
|
GTEX-113IC-0126 |
Skin, leg
|
PAXgene |
0
|
6 pieces, squamous epithelium is ~60 microns thick
|
Acceptable
|
 |
GTEX-113IC
|
61-70
|
Male
|
GTEX-113IC-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 40-50% adipose tissue (delineated), rest is fibroconnective tissue
|
Acceptable
|
 |
GTEX-113IC
|
61-70
|
Male
|
GTEX-113IC-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces mainly fat with fibroadipose tissue, only trace skeletal muscle
|
Unacceptable
|
 |
GTEX-113IC
|
61-70
|
Male
|
GTEX-113IC-0426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, clean specimens, prominent Monckeberg sclerosis, rep. foci delineated
|
Acceptable
|
 |
GTEX-113IC
|
61-70
|
Male
|
GTEX-113IC-0526 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, trace adherent nubbins of fat up to ~1mm, delineated. Good specimens
|
Acceptable
|
 |
GTEX-113JC
|
51-60
|
Female
|
GTEX-113JC-0126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces
|
Acceptable
|
 |