GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-1226 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, predominantly smooth muscle, focal adherent fat/serosa, good specimens
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-1326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; squamous mucosa is ~20-25% thickness
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-1426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, muscularis, adherent rim of fat on a few aliquots up to ~1mm, rep foci delineated
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-1526 |
Liver
|
PAXgene |
1
|
2 pieces, established cirrhosis, chronic steatohepatitis, macro- and microvesicular
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-1626 |
Adrenal glands
|
PAXgene |
2
|
2 pieces, all cortex, trace fat, moderately autolyzed
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-1726 |
Spleen
|
PAXgene |
2
|
2 pieces, moderately congested
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-1826 |
Pancreas
|
PAXgene |
2
|
2 pieces, moderate saponification, some Islets still visible (rep. ones delineated), but autolyzed
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-1926 |
Omentum
|
PAXgene |
1
|
2 pieces, ~5-10% vessels/fibrous tissue
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, all cortex, glomeruli present in all aliquots
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2126 |
Aorta
|
PAXgene |
1
|
6 pieces, adherent serosa on all up to ~0.5mm, minimal atherosis noted
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2226 |
Testis
|
PAXgene |
2
|
2 pieces, spermatogenesis is present but reduced
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2326 |
Stomach
|
PAXgene |
2
|
6 pieces, mucosa is ~20-40% thickness but moderately to severely autolyzed (mainly score 2, focally 3)
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2426 |
Ileum
|
PAXgene |
3
|
4 pieces, lymphoid elements are ~30-40% of tissue which is badly autolyzed, Rep. lymphoid aggregated delineated
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2526 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa totally autolyzed/sloughed
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2626 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, all muscularis
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2726 |
Prostate
|
PAXgene |
3
|
2 pieces, glandular hyperplastic pattern, but mucosal cells totally autolyzed
|
Acceptable
|
|
GTEX-ZTTD
|
41-50
|
Male
|
GTEX-ZTTD-2826 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, adherent fat on most sections up to ~0.5mm; squamous epithelium is ~30-40 microns
|
Acceptable
|
|
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0126 |
Gastroesophageal junction
|
PAXgene |
0
|
6 pieces, all pieces contain mucosa (NOT TARGET), only 3 contain muscularis propria (TARGET)
|
Unacceptable
|
|
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0226 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces, well trimmed
|
Acceptable
|
|
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces
|
Acceptable
|
|
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0426 |
Stomach
|
PAXgene |
1
|
6 pieces, only 2 with small regions of mucosa (delineated), predominantly muscle.
|
Acceptable
|
|
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0526 |
Ileum
|
PAXgene |
1
|
6 pieces, well trimmed, prominent lymphoid component
|
Acceptable
|
|
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0626 |
Thyroid gland
|
PAXgene |
2
|
2 pieces, larger piece is about 25% fat, fibrous tissue and skeletal muscle
|
Acceptable
|
|
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0726 |
Omentum
|
PAXgene |
1
|
4 pieces, includes some larger vessels
|
Acceptable
|
|
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0826 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, muscularis with scant fragment of mucosa (also TARGET)
|
Unacceptable
|
|