GTEX-1QPFJ
|
21-40
|
Female
|
GTEX-1QPFJ-2226 |
Pancreas
|
PAXgene |
2
|
2 pieces; islets are only slightly autolyzed; 40% fat content
|
Acceptable
|
 |
GTEX-1QPFJ
|
21-40
|
Female
|
GTEX-1QPFJ-2326 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; mucosa moderate autolysis, muscularis slight autolysis; 1 has no mucosa
|
Acceptable
|
 |
GTEX-1QPFJ
|
21-40
|
Female
|
GTEX-1QPFJ-2426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; generally well dissected; 1 has 1mm fibrofatty adventitia
|
Acceptable
|
 |
GTEX-1QPFJ
|
21-40
|
Female
|
GTEX-1QPFJ-2526 |
Adrenal glands
|
PAXgene |
1
|
2 pieces; well preserved cortex; 20 & 30% adherent fat
|
Acceptable
|
 |
GTEX-1QPFJ
|
21-40
|
Female
|
GTEX-1QPFJ-2626 |
Ileum
|
PAXgene |
1
|
6 pieces; lymphoid-rich mucosa on all pieces comprise 80% of area; glands partially sloughed
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, prominent Hashimoto thyroiditis with regressive changes; rep lymphoid aggregates delineated
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0326 |
Aorta
|
PAXgene |
0
|
6 pieces, atherosis up to ~0.3mm
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, target muscularis; no mucosa. Switch with -0525
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0526 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces target squamous mucosa is partly sloughing, ~0.2mm, ~5-10% thickness. Chronic lymphoid aggregates in lamina propria. Switch with -0425
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0626 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, confirmed target muscularis. Adherent rim of serosa up to ~1.5mm
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0726 |
Stomach
|
PAXgene |
2
|
6 pieces, target mucosa partly sloughed, up to ~0.5mm, moderately autolyzed
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0826 |
Omentum
|
PAXgene |
0
|
2 pieces, trace mesothelium/fascia
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0926 |
Pancreas
|
PAXgene |
1
|
2 pieces, islets numerous and well-preserved, rep encircled, only trace fat
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1026 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces, fibroadipose elements only
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1126 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, moderate dermal fat; squamous epithelium is ~50-60 microns
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1226 |
Ileum
|
PAXgene |
1
|
5 pieces, target lymphoid aggregates well preserved, ~10-20% of tissue, rep delineated
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, target mucosa well-fixed, partially stripped, 0.4mm, ~10-20% of thickness
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, target muscularis is ~60% of tissue, sample with care
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1526 |
Skin, leg
|
PAXgene |
0
|
6 pieces, moderate dermal fat (rep delineated); squamous epithelium is ~50-60 microns
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1626 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, trace fascia
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1726 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, ~10-15% interstitial fat/vascular elements, rep delineated
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1826 |
Nerve - tibial
|
PAXgene |
0
|
3 pieces, discontinuous rims of adherent fat up to ~0.5mm
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-1926 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, no significant atherosis or adherent fat, partial edge of fibrous tissue up to ~1.5mm (sections are longitudinal, not cross sections)
|
Acceptable
|
 |
GTEX-1R46S
|
61-70
|
Female
|
GTEX-1R46S-0126 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, no significant adherent fat
|
Acceptable
|
 |