GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1026 |
Stomach
|
PAXgene |
1
|
6 pieces, mucosa largely sloughed, minute foci remain, delineated
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1126 |
Colon, sigmoid
|
PAXgene |
1
|
4 pieces, abundant muscularis, also mucosa present, ~10% thickness
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1226 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, squamous epithelium is ~60-80 microns thick. Minimal dermal fat.
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1326 |
Colon, transverse
|
PAXgene |
1
|
4 pieces, small intestinal mucosa and muscularis. Uncertain location, can't be used for GTEx but should be retained for future studies
|
Unacceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1426 |
Minor salivary glands
|
PAXgene |
1
|
3 pieces, gland components range from 90% to 20%, delineated in all 3, focally contaminating squamous mucosa and stroma
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, contaminating 'floaters' of small bowel mucosa present in block, delineated rep areas.
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1626 |
Skin, leg
|
PAXgene |
0
|
6 pieces, minimal subcutaneous fat; squamou epithelium is ~ 40-60 microns thick
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1726 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, minimal interstitial fat
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1826 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, ~15-20% fibrous/vascular tissue, rep. foci delineated
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1926 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, one with adherent 'tag' of fibrovascular tissue, ~2mm long
|
Acceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-2026 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, one with discontinuous rim of fibroadipose tissue up to ~1mm thick
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0126 |
Aorta
|
PAXgene |
1
|
6 pieces, up to ~0.5mm adherent serosa on most
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0226 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, all cortex, well-preserved, a ~1mm aherent nubbin of fat on one, delineated.
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0326 |
Lung
|
PAXgene |
1
|
2 pieces, well preserved, broncial mucosa delineated (rep), patchy congestion/hemorrhagic pneumonitis, encircled rep. areas
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0426 |
Thyroid gland
|
PAXgene |
0
|
2 pieces, well-preserved
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0526 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, well preserved, all muscularis; switched with 0625; relabel for use
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, well preserved; squamous mucosa is ~0.3-0.5mm thick, switched with 0525; relabel for use
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; all muscularis
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0826 |
Stomach
|
PAXgene |
0
|
6 pieces, beautifully preserved, mucosa up to 1mm thick in all, 80-100% thickness
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0926 |
Omentum
|
PAXgene |
1
|
2 pieces, few small vessels, delineated, incidental omental lymph node in one, ensquared
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-1026 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, minimal subcutaneous fat; squamous epithelium is ~0.1mm thick
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-1126 |
Prostate
|
PAXgene |
1
|
2 pieces, well preserved; diffuse glandular hyperplasia
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-1226 |
Ileum
|
PAXgene |
1
|
6 pieces, ileal mucosa, well-preserved, rare lymphoid follicles delineated. Switched with 1325; may be used when relabeled as ileum, good specimens
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-1326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, all colon, mucosa is ~0.3m mm thick, promienent lymphoid follicles noted; rep. ones delineated. Switched with 1225; may be used once relabeld correctly as colon; good specimens.
|
Acceptable
|
|
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-1426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, all muscularis, trace serosa, good specimens
|
Acceptable
|
|