GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1126 |
Coronary artery
|
PAXgene |
1
|
2 pieces; one is disrupted due to calcific atherosclerosis, 2nd is 25-50% occluded with plaque and has partial rim of fat (1.5mm)
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1226 |
Skin, leg
|
PAXgene |
1
|
6 pieces; includes up to ~10% attached and internal fat, epidermis measures
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces; both include ~20 internal fat
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1426 |
Prostate
|
PAXgene |
2
|
2 pieces; 1 piece is glands with sloughed epithelium admixed with stroma, 2nd is ~20% glands/stroma, majority is surrounding fat/vessels/ganglion
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1526 |
Aorta
|
PAXgene |
1
|
6 pieces; minimal plaque
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1626 |
Atrial appendage
|
PAXgene |
1
|
3 pieces; interstitial fibrosis and hypertrophy, 1 piece includes focus of lymphocytes and ~40% fat
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1726 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; 5 and 20% fat, predominantly cortex
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1826 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; end stage renal disease, c/w history of hypertension, diabetes, and lupus
|
Unacceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1926 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; include from 10-30% largely internal fat
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-2026 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; atherosclerosis with luminal compromise >50%, medial calcific sclerosis
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-2126 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; fragmented, mature fat with <10% stroma/small vessels
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-2226 |
Ileum
|
PAXgene |
1
|
6 pieces; most include significant lymphoid component, some autolyzed mucosa
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-2326 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; full thickness, muscularis is better preserved than mucosa
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-2426 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; target muscularis
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-2526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; gynecomastia
|
Acceptable
|
 |
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-2626 |
Testis
|
PAXgene |
1
|
2 pieces; spermatogenesis is present
|
Acceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0126 |
Thyroid gland
|
PAXgene |
0
|
2 pieces, not thyroid; normal thymus
|
Unacceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0226 |
Aorta
|
PAXgene |
1
|
6 pieces, adherent serosa up to ~1.5mm, rep delineated
|
Acceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, confirmed target muscularis; incidental mucus gland delineated
|
Acceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa up to ~0.4mm; ~15-20% thickness;incidental submucosal mucus glands delineated(rep)
|
Acceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0526 |
Omentum
|
PAXgene |
1
|
2 pieces; incidental ~2.5mm omental lymph node present, delineated; ~5-10% fascia, vascular elements
|
Acceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0626 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, mucosa well preserved, ~0.3mm, ~10-15% thickness
|
Acceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0726 |
Ileum
|
PAXgene |
1
|
6 pieces, well-defined lymphoid aggregates delineated, ~20% of tissue
|
Acceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0826 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, ~target muscularis delineated, ~50% of tissue, rest is 'contaminant' serosa/mucosa
|
Acceptable
|
 |
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0926 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, target muscularis (delineated) is ~60% of tissue, rest is 'contaminant' mucosa/serosa
|
Acceptable
|
 |