GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-2526 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 6x2.5mm; mucosa=3; muscle =1.
|
Acceptable
|
 |
GTEX-XMD3
|
51-60
|
Female
|
GTEX-XMD3-1926 |
Pancreas
|
PAXgene |
3
|
2 pieces. 9.5x6.5 & 10x9mm; autolysis varies from 2 to 3 (annotated); 10 and 30% intra and extrapancreatic adipose.
|
Acceptable
|
 |
GTEX-XMD3
|
51-60
|
Female
|
GTEX-XMD3-2126 |
Stomach
|
PAXgene |
3
|
6 pieces. up to 8x3mm; mucosa=3;muscle=2 (autolysis)
|
Acceptable
|
 |
GTEX-XMD3
|
51-60
|
Female
|
GTEX-XMD3-2826 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 5x2mm; mucosa=3; muscularis=2
|
Acceptable
|
 |
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-1726 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces. up to 7x3.5mm; moderate mixture with medulla in 2/6 (marked); moderate glomerulosclerosis
|
Acceptable
|
 |
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2226 |
Stomach
|
PAXgene |
3
|
6 pieces. up to 8x3mm; mucosa = 3; muscle = 2
|
Acceptable
|
 |
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 7x2mm; mucosa=3; muscle= 2.
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-0926 |
Spleen
|
PAXgene |
3
|
2 pieces. 8x6.5 & 9x8mm;
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-1426 |
Adrenal glands
|
PAXgene |
3
|
2 pieces. 12x6 & 13x4mm; focal adherent fat ~1mm nubbin, all cortex, generally poorly preserved
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2326 |
Stomach
|
PAXgene |
3
|
6 pieces. up to 9x2mm; mucosa is ~30% thickness but poorly preserved
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2526 |
Ileum
|
PAXgene |
3
|
4 pieces. up to 5x3mm; ~5% lymphoid elements, delineated
|
Acceptable
|
 |
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 9x4mm; Mucosa delineated in one aliquot, ~10% thickness but badly autolyzed
|
Acceptable
|
 |
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1826 |
Spleen
|
PAXgene |
3
|
2 pieces, 9x8 & 10x8mm; badly autolyzed, congested
|
Acceptable
|
 |
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2226 |
Ileum
|
PAXgene |
3
|
5 pieces, up to 7x3mm; mucosa autolyzed, abundant lymphoid elements, rep. areas delineated, ~50-60% of specimens
|
Acceptable
|
 |
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 8.5x2mm; mucosa badly autolyzed, sloughed
|
Acceptable
|
 |
GTEX-XV7Q
|
41-50
|
Female
|
GTEX-XV7Q-1926 |
Liver
|
PAXgene |
3
|
2 pieces, 9x8 & 17.5x8mm; Marked midzonal necrosis, rep. areas delineated
|
Acceptable
|
 |
GTEX-XV7Q
|
41-50
|
Female
|
GTEX-XV7Q-2026 |
Ileum
|
PAXgene |
3
|
6 pieces, up to 8.5x2mm; mucosa sloughed
|
Acceptable
|
 |
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-0826 |
Spleen
|
PAXgene |
3
|
2 pieces, 8x6 & 9x7mm. Severe hemorrhage and congestion. A few preserved lymphoid nodules present.
|
Acceptable
|
 |
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-1426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 9x2.5mm. All have severely autolyzed mucosa; 3 have moderately autolyzed muscularis. 3 without muscularis
|
Acceptable
|
 |
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-1526 |
Pancreas
|
PAXgene |
3
|
2 pieces, 9.5x6 & 11x9mm; extensive autolysis
|
Acceptable
|
 |
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2326 |
Prostate
|
PAXgene |
3
|
2 pieces, 11x9 & 9.5x7.5mm; glands=3; muscular stroma=1.
|
Acceptable
|
 |
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2526 |
Stomach
|
PAXgene |
3
|
5 pieces, up to 6x4mm. All mucosa severely autolyzed. Small amount of moderately autolyzed muscularis.
|
Unacceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 10x3mm; ~50% badly autolyzed mucosa, rest is muscle & fat
|
Acceptable
|
 |
GTEX-YECK
|
61-70
|
Male
|
GTEX-YECK-2626 |
Colon, transverse
|
PAXgene |
3
|
1 piece, correlates with -2625, mucosa badly autolyzed
|
Acceptable
|
 |
GTEX-YECK
|
61-70
|
Male
|
GTEX-YECK-2726 |
Ileum
|
PAXgene |
3
|
5 pieces, up to 7x2mm allautolyzed mucosa; lymphoid follicles ~5-10% of total
|
Acceptable
|
 |