GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 12x4.5mm; mucosa well preserved, ~15% of thickness
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 13x11 & 12x10.5mm; mainly fat, ~10% fibrous tissue, rep areas delineated. No TDLU
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1626 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 11x3mm; mucosa ~10-15% thickness, mild/moderate autolysis
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1726 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, up to 10x4mm; squamous epithelium is ~2-3% thickness
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1926 |
Minor salivary glands
|
PAXgene |
0
|
3 pieces, up to 4x3.5mm; excellent specimens, well-preserved, 2mm nubbin non keratinizing squamous (inner lip) mucosa is present
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-2026 |
Testis
|
PAXgene |
1
|
2 pieces, 11x8 & 10x7.5mm; generalized tubular atrophy, empty lumina; ~1% of tubules with spermatogenesis
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-2126 |
Skin, leg
|
PAXgene |
0
|
6 pieces, up to 10x4mm; squamous epithelium is ~2% thickness. Adherent subcutaneous fat on several, up to 1.5mm thick
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-2226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 12x9 & 9x8mm; ~10-15% fibrous tissue, delineated (rep areas )
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-2326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, 11x7 & 10x9mm; ~10% interstital fat, rep area delineated
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-2426 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, 4.5x3 & 4x3mm; good clean specimens
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-2526 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, 2x1 & 2x2mm; peripheral nerve: unknown origin.
|
Unacceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, 8x8 & 9x7mm; moderate congestion
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0226 |
Lung
|
PAXgene |
1
|
2 pieces, 8x7 & 8x6.5mm; focal emphysema
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0326 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 2x2 & 3x2.5mm; no significant plaques
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0426 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 8x2mm; well dissected; flat plaques
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0526 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 8x7 & 7.5x6mm; a few small focal lymphoid collections
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0626 |
Omentum
|
PAXgene |
0
|
2 pieces, 11x8 & 11x8mm; no holes
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0726 |
Pancreas
|
PAXgene |
0
|
2 pieces, 9x8 & 8x7mm; 40-50% adipose, internal and external; 1 duct has mucinous metaplasia
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0826 |
Heart
|
PAXgene |
1
|
2 pieces, 10x7 & 9x7mm; 1 is 80% external adipose; other has 10% internal adipose; hypertrophied fibers
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0926 |
Atrial appendage
|
PAXgene |
0
|
2 pieces, 8x8 & 8x7.5mm; entirely adipose tissue, no muscle
|
Unacceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x2mm; well dissected
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1126 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces, up to 7x5mm; well dissected; prominent focus of ganglion cell marked
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1226 |
Gastroesophageal junction
|
PAXgene |
0
|
6 pieces, up to 6x3.5mm; 10, 30, & 60% periesophageal stroma in 3 pieces.
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1326 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 9x3mm; foveolar (surface) glands autolyzed; only 1 of 6 has muscularis
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 7x2mm; only 1 of 6 has muscularis
|
Acceptable
|
|