GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-1826 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 9x3mm. 3 with 10- 40% adipose
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-1926 |
Thyroid gland
|
PAXgene |
2
|
2 pieces, 10x9 & 12x8mm; smaller piece is 60% fibroadipose tissue
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2026 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces, 7x6 & 12x7mm; several ducts in smaller piece.
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2126 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 8x5mm; 3 pieces contain muscularis only (target); 3 pieces contain mucosa (NOT the target) and muscularis
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2226 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 9x3mm; lymphoid tissue abundant (autolysis=2); mucosa autolyzed=3; all pieces have abundant muscularis (not the target)
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2326 |
Prostate
|
PAXgene |
3
|
2 pieces, 11x9 & 9.5x7.5mm; glands=3; muscular stroma=1.
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2426 |
Testis
|
PAXgene |
2
|
1 piece, 10x6mm;
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2526 |
Stomach
|
PAXgene |
3
|
5 pieces, up to 6x4mm. All mucosa severely autolyzed. Small amount of moderately autolyzed muscularis.
|
Unacceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2626 |
Minor salivary glands
|
PAXgene |
1
|
3 pieces, up to 3.5x2mm. Well dissected with minimal adipose.
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2726 |
Brain - cortex
|
PAXgene |
2
|
2 pieces, 8x5 & 8x7mm. Up to 1 mm meninges on 1 piece.
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2826 |
Brain - cerebellum
|
PAXgene |
2
|
3 pieces, up to 10x7mm;
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-2926 |
Pituitary gland
|
PAXgene |
2
|
2 pieces, 7x5 & 12x7.5mm. 1 piece has 50% posterior pituitary.
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, 11x6 & 9x6mm moderate congestion
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 8.5x8.5 & 8.5x6mm; small adenoma, delineated
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0326 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 11x4mm;
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0426 |
Lung
|
PAXgene |
1
|
2 pieces, 9x8 & 10x8mm; diffuse, acute broncho pneumonia, densest areas delineated
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0526 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 10x10 & 13x9mm;
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0626 |
Heart
|
PAXgene |
1
|
2 pieces, 9x9 & 8x6.5mm; patchy fibrosis, confluent, c/w remote infarct(s)
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0726 |
Omentum
|
PAXgene |
1
|
2 pieces, 9x9 & 12x7mm;
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0826 |
Pancreas
|
PAXgene |
1
|
2 pieces, 11x9 & 11x10mm; well preserved; Islets rare but visible. Fibrous areas suggest remote pancreatitis
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-0926 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 9.5x5mm; all muscularis, good specimens
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1026 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 10x5mm; all muscularis, good specimens
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1126 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 9x5mm; mainly muscularis, adherent fatty nubbins on 5/6 up to 2 mm in d, rep ones delineated
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x3mm; squamous mucosa ~15% thickness
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1326 |
Ileum
|
PAXgene |
1
|
6 pieces, up to 8x5mm; 3/6 with mucosa, well-preserved, lymphoid aggregates visible, ~10% total tissue
|
Acceptable
|
|