GTEX-XBEC
|
51-60
|
Male
|
GTEX-XBEC-2826 |
Prostate
|
PAXgene |
3
|
2 pieces 10x8 & 8x5.9mm; glandular mucosa badly autolyzed
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1826 |
Prostate
|
PAXgene |
3
|
2 pieces, 13x8.5 & 12.5x8mm; Glands severely autolyzed; stroma moderately. 2mm adipose on edge of 1 piece.
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-0126 |
Thyroid gland
|
PAXgene |
3
|
2 pieces. 8x6 & 8x6mm;
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-0826 |
Lung
|
PAXgene |
3
|
2 pieces. 8x7 & 6x6mm; Larger piece has extensive pneumonia; organizing thrombi. Smaller piece has interstitial fibrosis and hemorrhage.
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-1826 |
Spleen
|
PAXgene |
3
|
2 pieces. 8.5x6 & 7x6mm; Severe congestion/hemorrhage. Several intact lymphoid nodules.
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-1926 |
Adrenal glands
|
PAXgene |
3
|
2 pieces. 8x7 & 9x5mm;
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2226 |
Stomach
|
PAXgene |
3
|
6 pieces. up to 9x3mm; deeper mucosa somewhat better preserved than superficial.
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2426 |
Prostate
|
PAXgene |
3
|
2 pieces. 8x7 && 9x7mm; 1 is all fibromuscular stroma (autolysis=2); 1 contains glands (autolysis=3).
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 8x2mm; Mucosa=3; muscularis=2 (autolysis)
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0926 |
Spleen
|
PAXgene |
3
|
2 pieces, 7x7 & 6.5x5mm; congested
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1626 |
Ileum
|
PAXgene |
3
|
4 pieces, up to 5x2mm; badly autolyzed, rare lymphoid nodules, <1% of specimen
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 8x2mm; mucosa sloughing/autolyzed
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-2626 |
Stomach
|
PAXgene |
3
|
6 pieces, up to 9x3mm; mucosa is ~20-25% thickness but badly autolyzed
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-2826 |
Prostate
|
PAXgene |
3
|
2 pieces, 9x8 7 9x8mm; glands totally autolyzed
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-0126 |
Testis
|
PAXgene |
3
|
2 pieces 8.5x7 & 8x6mm; tubules badly autolyzed
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1026 |
Lung
|
PAXgene |
3
|
2 pieces 8x7 & 7x7mm; badly autolyzed, apparent emphysematous changes
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1526 |
Spleen
|
PAXgene |
3
|
2 pieces 8x6 & 8x7mm;
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1626 |
Pancreas
|
PAXgene |
3
|
2 pieces 9x9 & 9x8mm; ~50% parenchyma, badly autolyzed, extensive interstitial fat
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1726 |
Adrenal glands
|
PAXgene |
3
|
2 pieces 9x7 & 8x6mm; All cortex, badly autolzyed
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1926 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces up to 8x3mm ~600 fat/fibrosis, where present cortex badly fibroitic c/w history polycystic kidney disease. Not appropriate for GTEx; so 'unacceptable', save for potential future study but badly autolyzed
|
Unacceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2026 |
Stomach
|
PAXgene |
3
|
6 pieces up to 9x3.5mm; mucosa ~30-40% thickness but badly autolyzed
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2126 |
Ileum
|
PAXgene |
3
|
4 pieces up to 4x3mm; badly autolyzed. Lymphoid aggregates <5%
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2326 |
Colon, transverse
|
PAXgene |
3
|
6 pieces up to 8x3mm; mucosa badly autolyzed, ~10% thickness
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2626 |
Prostate
|
PAXgene |
3
|
2 pieces 9x9 & 9x8mm; glands badly autolyzed
|
Acceptable
|
|
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-2426 |
Stomach
|
PAXgene |
3
|
6 pieces, up to 9x4mm; mucosa=3; muscularis =2
|
Acceptable
|
|