GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0326 |
Aorta
|
PAXgene |
1
|
6 pieces, ~9x2mm, 4 of 6 with adherent fat/vasa vasorum up to 2mm thick
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces, one distorted ~3mm d with adherent nubbins fat/fibrous tissue up to 2x5mm
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0526 |
Esophagus - mucosa
|
PAXgene |
1
|
2pieces fibroadipose tissue, uncertain provenance.
|
Unacceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, With 5-10% adherent squamous mucosa
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0726 |
Stomach
|
PAXgene |
1
|
6 pieces ~5x5mm, mainly muscularis, mucosa sloughed, focally present, delineated, where present, well-preserved
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0826 |
Omentum
|
PAXgene |
1
|
2 pieces ~9x6mm
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0926 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces ~7x4mm, up to 20% adherent gastric cardiac mucosa, rep areas delineated. Can be retained, focus should be on muscularis only. Sample with caution
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1026 |
Ileum
|
PAXgene |
1
|
6 pieces ~6x5mm, 2 with abundant lymphoid elements, delineated, rest with tract, largely muscle and/or mucosa
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces ~6x4mm, 5 with mucosa, well preserved, up to 15% thickness
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1226 |
Lung
|
PAXgene |
1
|
2 pieces, 10x7mm, patchy acute pneumonita/chronic pneumonitis, rep areas delineated
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1326 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, ~7x4mm, up to ~50% muscularis in 5 sections, one with no muscle
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces ~9x9mm, fibroadipose tissue, no ductal elements noted
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1526 |
Prostate
|
PAXgene |
1
|
2 pieces ~9x7mm, mainly fibromuscular stroma, one focal area glandular elements, ~1mm, encircled
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1626 |
Testis
|
PAXgene |
1
|
2 pieces /`9x6mm, spermatogenesis is present
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1726 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces ~6x5mm, squamous epithelium is ~1% thickness
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1826 |
Skin, leg
|
PAXgene |
0
|
6 pieces ~8x4mm, squamous epithelium is ~1-2% thickness
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1926 |
Adipose tissue
|
PAXgene |
0
|
2 pieces ~8x2mm
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-2026 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces~7x5mm, minimal fat
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-2126 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces ~4mm d. Minimal adherent rim of fat on one, delineated, ~0.5mm
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-2226 |
Artery - tibial
|
PAXgene |
0
|
2 pieces ~3mm d. Clean specimens.
|
Acceptable
|
|
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-0126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 8x4 & 7x6mm; mild lymphocytic infiltrate consistent with Hashimoto disease
|
Acceptable
|
|
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-0226 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 10x2.5mm; well trimmed, no plaques
|
Acceptable
|
|
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-0326 |
Pancreas
|
PAXgene |
1
|
2 pieces, 11x10 & 10x8.5mm; 20-40% external adipose up to 2.6 mm thick
|
Acceptable
|
|
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-0426 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, 18x11 & 19x17mm; both encased in adipose up to 50% of area
|
Acceptable
|
|
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-0526 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, up to 9.5x2mm; all cortex
|
Acceptable
|
|