GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2326 |
Ileum
|
PAXgene |
2
|
4 pieces. 5x3mm; Lymphoid nodules=2; mucosa=3. Well dissected. several lymphoid nodules circled.
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2426 |
Prostate
|
PAXgene |
3
|
2 pieces. 8x7 && 9x7mm; 1 is all fibromuscular stroma (autolysis=2); 1 contains glands (autolysis=3).
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2526 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces. up to 8x1.5mm; 4/6 pieces have remnants of totally autolyzed glands (annotated)
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 8x2mm; Mucosa=3; muscularis=2 (autolysis)
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2726 |
Testis
|
PAXgene |
2
|
2 pieces. 8x6 & 8.5x7mm;
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 7x3mm; Squamous epithelium thiinner than usual (25microns), ~1% thickness
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 9x9 & 9x8mm;
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0326 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 8x3mm; squamous epithelium 34 microns, ~1.5% thickness
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0426 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 3x2 & 3x2mm; fairly clean specimens
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0526 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 8x3.5 & 9x3mm; adherent rim of fat ~0.5-1mm around both, delineated
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0626 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 8x8 & 7x6mm; ~15% interstitial fat, delineated
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0726 |
Thyroid gland
|
PAXgene |
2
|
2 pieces, 7.5x7 & 8x8mm; unusually poorly preserved
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0826 |
Liver
|
PAXgene |
2
|
2 pieces, 9x7 & 9x6mm; mimimal steatosis
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-0926 |
Spleen
|
PAXgene |
3
|
2 pieces, 7x7 & 6.5x5mm; congested
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1026 |
Omentum
|
PAXgene |
1
|
2 pieces, 11x9.5 & 8x6mm;
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1126 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces, 10x8 & 10x8mm; rare ductal elements, delineated, gynecomastoid features (stromal)
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1226 |
Pancreas
|
PAXgene |
2
|
2 pieces, 9x9 & 9x8mm; diffuse saponificaiton, Islets not well seen
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1326 |
Adrenal glands
|
PAXgene |
2
|
2 pieces, 12x4 & 11x3mm; all cortex, generally clean, one ahderent nubbin of fat, ~1mm, delineated, on one aliquot
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1426 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, up to 7x3mm; diffuse chronic nephritis with 'thyroidization', foci of papillary neoplasm in 2 sections suspcious for papillary renal cell carcinoma.
|
Unacceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1526 |
Testis
|
PAXgene |
2
|
2 pieces, 8.5x7 & 7x7mm; badly autolyzed tubules
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1626 |
Ileum
|
PAXgene |
3
|
4 pieces, up to 5x2mm; badly autolyzed, rare lymphoid nodules, <1% of specimen
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 8x2mm; mucosa sloughing/autolyzed
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1826 |
Lung
|
PAXgene |
2
|
2 pieces, 8x7 & 8x7mm; diffuse hemorrhagic pneumonitis obliterates normal architecture, poorly preserved
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1926 |
Aorta
|
PAXgene |
2
|
6 pieces, up to 8x2mm;
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-2026 |
Atrial appendage
|
PAXgene |
2
|
2 pieces, 9x8 & 8x8mm;
|
Acceptable
|
|