GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-0826 |
Heart
|
PAXgene |
1
|
2 pieces, mild ischemic changes; incidental 1mm coronary artery branch noted, delineated
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-0926 |
Pancreas
|
PAXgene |
1
|
2 pieces, well - preserved. Islets-well visualized; rep. ones delineated. Adherent ~2mm fatty aggregated on one section, delineated
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1026 |
Aorta
|
PAXgene |
1
|
6 pieces, ~0.5mm adherent serosal on most sections
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1226 |
Uterus
|
PAXgene |
1
|
2 pieces, all myometrium, no significant endometrial components noted.
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1326 |
Cervix - endocervix
|
PAXgene |
1
|
6 pieces, all cervix; foci of well-preserved endocervical glands are present, delineated. Since this was a former GTEx target, recommend retaining after re-labeling.
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, all with squamous mucosa ~0.3-0.5mm thick, a switch with 1625
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, all muscularis a switch with 1525
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1926 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, all muscularis; good specimens; adherent serosa on all, 1-2mm; rep foci delineated
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2026 |
Stomach
|
PAXgene |
1
|
6 pieces, mucosa totoally denuded/sloughed, muscularis only
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, moderately well preserved, some foci approach autolysis score 2. Mucosa is 0.3-0.6mm, ~10% total thickness
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2626 |
Colon, sigmoid
|
PAXgene |
1
|
4 pieces, mainly muscularis, 2 have adherent fat/mucosa, the later ~10% of specimen, delineated
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0326 |
Adrenal glands
|
PAXgene |
1
|
2 pieces
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0426 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, one piece has small attachment of adipose and fibrovascular tissue, focal adipose metaplasia of stroma
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0526 |
Coronary artery
|
PAXgene |
1
|
2 pieces, calcific atherosclerosis, focal adventitial lymphoid deposits, perivascular fat up to 1.4mm thick
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0626 |
Heart
|
PAXgene |
1
|
2 pieces and small fragment of ?pericardium (not target), delineated.
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0726 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, not omentum as originally labeled; appears to represent atrial appendage specimen with interstitial and patchy fibrosis
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-1226 |
Omentum
|
PAXgene |
1
|
2 pieces, not atrial appendage as originally labeled; adipose tissue,with central defects (? incomplete fixation), tissue exceeds recommended size
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-1426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, all with mucosa, focal chronic inflammation
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-1626 |
Stomach
|
PAXgene |
1
|
6 pieces, all with mucosa
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, two with small attachment of mucosa (not target)
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-1826 |
Ileum
|
PAXgene |
1
|
6 pieces, two with abundant mucosal lymphoid tissue , other with ileocecal mucosa with focal lymphoid aggregates, all also have abundant muscularis (not target)
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-2026 |
Prostate
|
PAXgene |
1
|
2 pieces, epithelium largely sloughed in one piece with dilated glands
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-2126 |
Testis
|
PAXgene |
1
|
2 pieces, active spermatogenesis, some vascular thickening and tubular hyalinization
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-2326 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, chronically inflamed salivary gland comprises only ~5% of total tissue (delineated), rest is predominantly mucosa and stroma
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-2426 |
Adipose tissue
|
PAXgene |
1
|
3 pieces, scant fibrous tissue, central defect (? incomplete fixation)
|
Acceptable
|
|