GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1726 |
Pancreas
|
PAXgene |
1
|
2 pieces ~9x6mm. Minimal fat, well preserved. Islets rare but visible, representative ones encircled
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1826 |
Omentum
|
PAXgene |
1
|
2 pieces ~8x6mm
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1926 |
Ileum
|
PAXgene |
2
|
6 pieces ~5x1.5mm. Includes muscle and lymphoid aggregates, epithelium autolyzed and sloughed. ~50% of specimen are lymphocytes
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2026 |
Colon, transverse
|
PAXgene |
2
|
6 pieces ~8 x 1.5mm Mucosa poorly preserved; where visible ~20% of thickness
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2126 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces ~7x 1.5mm Mucosa poorly preserved, ~30% of thickness (~300 microns)
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2226 |
Prostate
|
PAXgene |
2
|
2 pieces ~7x5mm. Glandular elements poorly preserved, glandular and stromal hyperplasia is evident
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces ~8x6mm. No ductal elements noted
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2426 |
Stomach
|
PAXgene |
1
|
6 pieces ~6x2.5mm. Mucosa variably well-poorly preserved, up to 30-40 thickness, ~700 microns
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0126 |
Coronary artery
|
PAXgene |
2
|
2 pieces, 4x3.5 & 5x4mm; 3mm arteries with up to 1.6 mm surrounding adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 9x6 & 10x9mm; myofibers pale compared to other heart specimen; BSS notes "mislabeled solution"
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0326 |
Heart
|
PAXgene |
1
|
2 pieces, 8x7 & 8x7mm; no adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0426 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 8x4mm; all except the smallest are free of subcutaneous adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0526 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 6x3.5 & 5x3mm; 10-20% surrounding adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0626 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 3x1 & 3x2mm; ~2 mm clean arteries & 1 small branch; free of adipose;
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0726 |
Skin, leg
|
PAXgene |
1
|
6 pieces, 7x3mm; largely free of subcutaneous adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0826 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 6.5x5.5 & 8x6mm; cassette indentations
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0926 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces; 10x5 & 10x6mm; free of adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1026 |
Testis
|
PAXgene |
2
|
2 pieces, 7x7 & 6x6mm; reduced spermatogenesis; patchy tubular fibrosis
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1126 |
Lung
|
PAXgene |
1
|
2 pieces, 8x7 & 10x7.5mm; scattered hemorrhages; pleura present (avoid)
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 8x2mm; good specimen
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 8x4mm; good specimen, minimal adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1426 |
Liver
|
PAXgene |
1
|
2 pieces, 8x7 & 6x6mm; no fat, fibrosis or excess congestion
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1526 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 9x1.5mm; minimal plaque; adipose ee adventitia
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1626 |
Spleen
|
PAXgene |
1
|
2 pieces, 8.5x7 & 9x8mm; moderate congestion
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-1726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 8x2mm; all with good muscularis and no adipose
|
Acceptable
|
|