GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2126 |
Testis
|
PAXgene |
1
|
2 pieces, spermatogenesis is present but appears reduced
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2226 |
Skin, suprapubic
|
PAXgene |
0
|
2 pieces, trace adherent and minimal intra-dermal fat, rep delineated. Squamous epithelium is ~30-40 microns
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, mainly fibroadipose elements. Trace ductal elements encircled
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, target mucosa with sloughed mucosal ductal elements, residual lamina propria is ~0.1mm
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2526 |
Ileum
|
PAXgene |
3
|
6 pieces, mucosa with advance autolysis, devoid of lymphoid aggregates
|
Unacceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2626 |
Stomach
|
PAXgene |
2
|
6 pieces, mucosa up to ~0.5mm, advanced autolysis, sloughed on 3/6 pieces
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, confirmed target muscularis, trace autolyzed 'contaminant' mucosa present
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2826 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, glandular parenchyma is ~95% of specimen, trace adherent fibrous nubbin up to 0.2mm
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-2926 |
Brain - cortex
|
PAXgene |
1
|
4 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-3026 |
Brain - cerebellum
|
PAXgene |
1
|
4 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-1IKJJ
|
61-70
|
Male
|
GTEX-1IKJJ-3126 |
Pituitary gland
|
PAXgene |
1
|
1 piece, ~70% adenohypophysis, ~20% neurohypophysis (delineated), ~10% dura
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0126 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; mild to focally moderate degree of intimal fibroatheromatous plaques; widely patent lumens; minute calcification
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0226 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; nerve contains hyalinized small blood vessels; well trimmed; minimal fat;
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0326 |
Liver
|
PAXgene |
2
|
2 pieces; slight to moderate increase of portal lymphocytes, but no necrosis
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0426 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces; <5% internal fat; slight atrophy
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0526 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; 5% vascular content
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0626 |
Skin, leg
|
PAXgene |
0
|
6 pieces; 1% dermal fat; well trimmed
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0726 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces; 1% dermal fat; well trimmed
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0826 |
Omentum
|
PAXgene |
1
|
2 pieces; extraneous and/or foreign material in 1 piece, <10%[outlined]
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-0926 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; occasional sclerosed glomeruli and small lymphoid collections
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-1026 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; well trimmed, poorly preserved
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-1126 |
Stomach
|
PAXgene |
2
|
6 pieces; moderate chronic gastritis with moderate mucosal lymphoid infiltrates
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-1226 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; admixture with skeletal muscle [outlined]; specimen taken too proximally
|
Unacceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-1326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; small foci of chronic inflammation
|
Acceptable
|
 |
GTEX-1IKK5
|
61-70
|
Male
|
GTEX-1IKK5-1426 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; well dissected
|
Acceptable
|
 |