GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1626 |
Pancreas
|
PAXgene |
2
|
2 pieces 8x6 & 7x7 mm; ~10% adipose within parenchyma (not outside)
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1726 |
Adrenal glands
|
PAXgene |
2
|
2 pieces 17x2 & 16x2 mm with about same amount of peripheral adipose along one edge
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1826 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces up to 8x4 mm; all cortex; moderate vascular congestion
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-1926 |
Kidney - medulla
|
PAXgene |
2
|
2 pieces 10x7 & 8x8 mm; both have cortex (30-40%) and medulla; moderate vascular congestion
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2026 |
Testis
|
PAXgene |
2
|
2 pieces 10x5 & 10x8 mm; spermatogenesis
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2126 |
Prostate
|
PAXgene |
3
|
2 pieces 11x5 & 9x9 mm; glands totally autolyzed in 9x9mm piece; other piece is fibromuscular (both smooth and striated muscle (peripheral to prostatic parenchyma)
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2226 |
Urinary bladder
|
PAXgene |
3
|
6 pieces up to 8x3 mm; epithelium sloughed; one piece 80% adipose
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2326 |
Colon, transverse
|
PAXgene |
3
|
6 pieces up to 8x2 mm; mucosa largely autolyzed
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2426 |
Stomach
|
PAXgene |
2
|
6 pieces up to 8x3 mm; only deep mucosa has intact glands
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2526 |
Brain - cerebellum
|
PAXgene |
2
|
4 pieces up to 5x5 mm;
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2626 |
Brain - cortex
|
PAXgene |
2
|
4 pieces up to 5x5 mm;
|
Acceptable
|
|
GTEX-T6MN
|
51-60
|
Male
|
GTEX-T6MN-2726 |
Pituitary gland
|
PAXgene |
2
|
2 pieces: 6x4 mm with good parenchyma; 6x1.7 is largely fibrous tissue
|
Acceptable
|
|
GTEX-T8EM
|
41-50
|
Male
|
GTEX-T8EM-0326 |
Lung
|
PAXgene |
1
|
2 pieces, 8x7mm
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, ~12x6mm. Focal lymphocytic thyroiditis (encircled), not diffuse enough to be Hashimoto's
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0226 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces ~12x6mm. No visible ductal elements, fibro-adipose tissues only.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces ~8x2.5mm. Squamous mucosa is ~10-20% of thickness; occasional sub-mucosal glands noted, encircled. Focal chronic inflammation ensquared.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces ~8x3mm
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0526 |
Stomach
|
PAXgene |
1
|
6 pieces, ~10x4mm. Mucosa well- preserved, ~20-25% of thickness. Surface hemorrhage/erosions ? etiology.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0626 |
Colon, transverse
|
PAXgene |
1
|
6 pieces ~9x3mm. Mucosa remarkably well-preserved, ~10% of thickness
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0726 |
Urinary bladder
|
PAXgene |
2
|
5 pieces fragmented, ~8x4mm. Urothelium partly sloughed but better preserved than typical, <1% of thickness
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0826 |
Prostate
|
PAXgene |
1
|
2 pieces, not prostate but seminal vesicle
|
Unacceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-0926 |
Testis
|
PAXgene |
1
|
2 pieces ~8x8mm. Better preserved than usual, spermatogenesis present but appears slightly reduced
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-1026 |
Skin, leg
|
PAXgene |
0
|
6 pieces, ~6x2.5mm. Squamous epithelium is ~2-3% of thickness.
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-1126 |
Adipose tissue
|
PAXgene |
0
|
2 pieces ~10x5mm
|
Acceptable
|
|
GTEX-TKQ1
|
21-40
|
Male
|
GTEX-TKQ1-1226 |
Artery - tibial
|
PAXgene |
0
|
2 pieces ~5mm d. Excellent clean specimens; one aliquot with small branch arteries, encircled, suitable for analysis.
|
Acceptable
|
|