GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1526 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 7x3mm; colon in all 6; no ileum
|
Unacceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1826 |
Prostate
|
PAXgene |
1
|
2 pieces, 10x8.5 & 9x8mm; 1 is seminal vesicle; other is fibroadipose, muscle and ganglia; no prostate tissue
|
Unacceptable
|
|
GTEX-Y8DK
|
61-70
|
Male
|
GTEX-Y8DK-0626 |
Pituitary gland
|
PAXgene |
1
|
2 pieces 9 x 5 and 7 x 4 mm. A 5 x 3 mm adenoma is present in 1 piece. A 2.5 mm piece of posterior pituitary is present at edge of one piece.
|
Unacceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1226 |
Colon, transverse
|
PAXgene |
2
|
1 piece. 7x3.5mm; small intestine not colon
|
Unacceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1526 |
Vagina
|
PAXgene |
1
|
6 pieces. up to 9x4mm; 3 are vagina; 3 have abundant sebaceous glands, therefore vulva was sampled.
|
Unacceptable
|
|
GTEX-YEC4
|
21-40
|
Male
|
GTEX-YEC4-1626 |
Prostate
|
PAXgene |
1
|
2 pieces, 10x7.5 and 9x7mm; not prostate but seminal vesicle/stroma
|
Unacceptable
|
|
GTEX-YJ89
|
51-60
|
Male
|
GTEX-YJ89-2526 |
Ileum
|
PAXgene |
3
|
6 pieces; essentially no intact mucosa, muscularis present
|
Unacceptable
|
|
GTEX-Z93S
|
51-60
|
Male
|
GTEX-Z93S-1126 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, mixed fibrofatty/vascular/smooth muscle, not typical of pure esophageal muscularis, so therefore of uncertain provenance.
|
Unacceptable
|
|
GTEX-Z93S
|
51-60
|
Male
|
GTEX-Z93S-1426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, fibroadipose/vascular/smooth muscle, no mucosa present. Uknown provenance.
|
Unacceptable
|
|
GTEX-Z93T
|
51-60
|
Male
|
GTEX-Z93T-0526 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces. NO NERVE; all adipose
|
Unacceptable
|
|
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1326 |
Colon, transverse
|
PAXgene |
1
|
4 pieces, small intestinal mucosa and muscularis. Uncertain location, can't be used for GTEx but should be retained for future studies
|
Unacceptable
|
|
GTEX-ZAB4
|
41-50
|
Male
|
GTEX-ZAB4-2026 |
Thyroid gland
|
PAXgene |
1
|
2 pieces. Severe fibrosis and lymphoid infiltrate with minimal thyroid tissue remaining; foci of squamous metaplasia. Most likely Riedel's thyroiditis; but cannot exclude Hashimoto's.
|
Unacceptable
|
|
GTEX-ZAB5
|
51-60
|
Male
|
GTEX-ZAB5-1326 |
Stomach
|
PAXgene |
1
|
6 pieces; muscle only, no mucosa present
|
Unacceptable
|
|
GTEX-ZAKK
|
61-70
|
Male
|
GTEX-ZAKK-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces. Both pieces contain large amounts of dense fibrous tissue, probably fascia: 90% of 1 and 60% of other.
|
Unacceptable
|
|
GTEX-ZDTS
|
61-70
|
Male
|
GTEX-ZDTS-2626 |
Ileum
|
PAXgene |
3
|
4 pieces; 2 minute autolyzed lymphoid collections (marked)
|
Unacceptable
|
|
GTEX-ZDTT
|
61-70
|
Male
|
GTEX-ZDTT-0626 |
Thyroid gland
|
PAXgene |
0
|
2 pieces, microscopic foci of papillary carcinoma, delineated.
|
Unacceptable
|
|
GTEX-ZDTT
|
61-70
|
Male
|
GTEX-ZDTT-1626 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, NOT prostate as originally labeled. Colon. All contain muscularis (target of sigmoid colon specimen), only one lacks mucosa (not target of sigmoid colon specimen).
|
Unacceptable
|
|
GTEX-ZDYS
|
51-60
|
Male
|
GTEX-ZDYS-1426 |
Ileum
|
PAXgene |
2
|
6+ fragments, predominantly mucosa, partly autolyzed, and mucus, with single focus of degenerating lymphoid tissue
|
Unacceptable
|
|
GTEX-ZDYS
|
51-60
|
Male
|
GTEX-ZDYS-1826 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, mucosa and submucosa (not target) with only scant muscularis (target)
|
Unacceptable
|
|
GTEX-ZF2S
|
51-60
|
Female
|
GTEX-ZF2S-0526 |
Thyroid gland
|
PAXgene |
1
|
2 pieces. Papillary carcinoma [3.3 mm]. Hashimoto thyroiditis, moderate degree.
|
Unacceptable
|
|
GTEX-ZF3C
|
51-60
|
Female
|
GTEX-ZF3C-2526 |
Colon, transverse
|
PAXgene |
0
|
5 pieces, not colon, chronically inflamed squamous mucosa
|
Unacceptable
|
|
GTEX-ZF3C
|
51-60
|
Female
|
GTEX-ZF3C-2626 |
Ileum
|
PAXgene |
3
|
4 pieces, fragmented pieces of muscularis and autolyzed mucosa with lymphoid component
|
Unacceptable
|
|
GTEX-ZG7Y
|
51-60
|
Male
|
GTEX-ZG7Y-0826 |
Muscle, skeletal
|
PAXgene |
0
|
2pieces, fat & tendon, no muscle
|
Unacceptable
|
|
GTEX-ZG7Y
|
51-60
|
Male
|
GTEX-ZG7Y-1526 |
Gastroesophageal junction
|
PAXgene |
1
|
2 pieces muscularis but includes gastric outflow mucosa, not authorized for GTEx
|
Unacceptable
|
|
GTEX-ZLFU
|
41-50
|
Male
|
GTEX-ZLFU-1626 |
Colon, transverse
|
PAXgene |
2
|
6 pieces. Small bowel not colon
|
Unacceptable
|
|