GTEX-YB5E
|
41-50
|
Male
|
GTEX-YB5E-1926 |
Testis
|
PAXgene |
1
|
2 pieces, 12x9 & 11x8mm; spermatogenesis is present
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0126 |
Heart
|
PAXgene |
1
|
2 pieces. 8x8 & 11x8mm; No extraneous fat
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0326 |
Aorta
|
PAXgene |
1
|
6 pieces. up to 8x3mm; Fibrofatty adventitia on all up to 1 mm thick. No plaques.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces. 5x3 & 9x5mm; 90% adipose. Small artery with plaque in one and very small artery in other.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0526 |
Thyroid gland
|
PAXgene |
1
|
2 pieces. 8x8 & 9.5x9mm; Well trimmed.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0625 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces. up to 9x7mm; Well trimmed muscularis.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0725 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces. up to 10x5mm; Well trimmed.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0825 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces. up to 10x5mm; Well preserved mucosa. 2 have muscularis propria up to 2 x 3 mm [annotated].
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0826 |
Esophagus - mucosa
|
PAXgene |
1
|
1 piece. 7x5mm; Well dissected: no muscularis propria.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-0926 |
Omentum
|
PAXgene |
1
|
2 pieces. 15x9 & 10x10mm; 1 with 1mm lymph nodule [annotated]. Central holes.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1026 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces. up to 10.5x5mm; All have mucosa, 3 with large amounts. TARGET is muscularis propria; discard mucosa.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1126 |
Ileum
|
PAXgene |
1
|
6 pieces. up to 8x4mm; Only 1 of 6 has mucosa; all have muscularis propria. TARGET: Mucosa; discard muscularis. The one with mucosa has abundant lymphoid tissue
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1426 |
Ovary
|
PAXgene |
1
|
2 pieces. 9x9 & 14x8mm; Inactive. 1 has adherent stroma.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1526 |
Vagina
|
PAXgene |
1
|
6 pieces. up to 9x4mm; 3 are vagina; 3 have abundant sebaceous glands, therefore vulva was sampled.
|
Unacceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1626 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces. 14x10 & 13x11mm; Ducts and lobules present. Adipose is 50-60%.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1726 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces. 2x1 & 2x1mm; Very well dissected. no extraneous tissue.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-1826 |
Pancreas
|
PAXgene |
1
|
2 pieces. 9x8 & 7x7mm; Very well dissected. no extraneous adipose. 2mm focus of blood vessels.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-2026 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces. up to 8x3.5mm; 5/6 have well trimmed subcutaneous fat.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-2126 |
Skin, leg
|
PAXgene |
1
|
1 piece. 10x4mm; well trimmed subcutaneous fat; about 10% internal adipose.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-2226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces. 12x11 & 12x12mm; Central holes.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-2326 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces. 10.5x9 & 13x9mm; Very well trimmed of extraneous tissue.
|
Acceptable
|
|
GTEX-YB5K
|
41-50
|
Female
|
GTEX-YB5K-2426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces. 5x4 & 6x4mm; 10% adherent adipose.
|
Acceptable
|
|
GTEX-YBZK
|
51-60
|
Female
|
GTEX-YBZK-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces , ~13x4mm : all have residual subcutaneous adipose tissue up to 2mm in thickness; skin is up to 3.5mm thick
|
Acceptable
|
|
GTEX-YBZK
|
51-60
|
Female
|
GTEX-YBZK-0326 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces ~17x12mm ; both with internal adipose tissue comprising 20-50% of tissue. Atrophy and interstitial fibrosis.
|
Acceptable
|
|
GTEX-YBZK
|
51-60
|
Female
|
GTEX-YBZK-0426 |
Nerve - tibial
|
PAXgene |
1
|
3 pieces ~5mm d. ; two with significant attached adipose tissue nubbins up to ~3mm thick.
|
Acceptable
|
|