GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 7x4 mm; mild chronic esophagitis with erosions
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces up to 8x4 mm;
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0826 |
Stomach
|
PAXgene |
0
|
6 pieces up to 8x5 mm; very good mucosal preservation
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0926 |
Pancreas
|
PAXgene |
0
|
2 pieces 10x9 & 10x2 mm; <10& peripheral adipose; good preservation
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-1026 |
Prostate
|
PAXgene |
1
|
2 pieces 10x7 & 8x8 mm; mostly fibromuscular hyperplasia; a few glands in one aliquot
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-1126 |
Testis
|
PAXgene |
1
|
2 pieces 10x8 & 10x8 mm; slight decrease iin spermatogenesis
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-1226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 7x3 mm; good mucosal preservation
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-1326 |
Skin, leg
|
PAXgene |
0
|
6 pieces up to 9x3 mm; minimal subcutaneous adipose
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-1426 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 12x9 & 11x10 mm; large central unfixed empty zones 40-50% of aliquots
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-1526 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces 9x7 & 7x7 mm; larger has ~10% adipose between muscle bundles
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-1626 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces 5x3 & 4x3 mm; <10% peripheral adipose
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-1726 |
Artery - tibial
|
PAXgene |
0
|
2 pieces ,2 mm artery; a few punctate calcium deposits in intima; clean, no adipose
|
Acceptable
|
|
GTEX-SSA3
|
61-70
|
Male
|
GTEX-SSA3-0126 |
Skin, leg
|
PAXgene |
0
|
5 pieces + one fragment, ~8x2mm. Squamous epithelium is ~2-3% of thickness.
|
Acceptable
|
|
GTEX-SSA3
|
61-70
|
Male
|
GTEX-SSA3-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces ~10 x 10mm. One with extreme separation but seems well preserved.
|
Acceptable
|
|
GTEX-SSA3
|
61-70
|
Male
|
GTEX-SSA3-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces ~8x7mm. Prominent band of scarring/fibrosis encircled, largest confluent focus ~1.5x1mm in one aliquot, ~15 % of specimen
|
Acceptable
|
|
GTEX-SSA3
|
61-70
|
Male
|
GTEX-SSA3-0426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces ~4mm d. Rim of fibrous tissue 0.5 --1mm around larger aliquot
|
Acceptable
|
|
GTEX-SSA3
|
61-70
|
Male
|
GTEX-SSA3-0526 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces ~4.5mm d. Discontinuous rims of adherent fat around both ~0.5--1.5mm thick, representative foci encircled.
|
Acceptable
|
|
GTEX-SUCS
|
61-70
|
Male
|
GTEX-SUCS-0126 |
Spleen
|
PAXgene |
1
|
2 pieces 6x6 & 8x6 mm; mild congestion
|
Acceptable
|
|
GTEX-SUCS
|
61-70
|
Male
|
GTEX-SUCS-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces 9x5 & 7x4 mm;
|
Acceptable
|
|
GTEX-SUCS
|
61-70
|
Male
|
GTEX-SUCS-0326 |
Heart
|
PAXgene |
1
|
2 pieces 8x6 & 7x7 mm; contraction bands; no fibrosis or fat
|
Acceptable
|
|
GTEX-SUCS
|
61-70
|
Male
|
GTEX-SUCS-0426 |
Aorta
|
PAXgene |
1
|
6 pieces up to 9x2 mm; minimal plaque; minimal adventitial adipose
|
Acceptable
|
|
GTEX-SUCS
|
61-70
|
Male
|
GTEX-SUCS-0526 |
Adrenal glands
|
PAXgene |
1
|
2 pieces 8x6 & 7x7 mm; cortex; one has ~30% adipose
|
Acceptable
|
|
GTEX-SUCS
|
61-70
|
Male
|
GTEX-SUCS-0626 |
Lung
|
PAXgene |
1
|
2 pieces 11x4 & 7x7 mm; patchy emphysema and fibrosis; no inflammation
|
Acceptable
|
|
GTEX-SUCS
|
61-70
|
Male
|
GTEX-SUCS-0726 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 7x4 mm; all have mucosa, no muscularis propria
|
Acceptable
|
|
GTEX-SUCS
|
61-70
|
Male
|
GTEX-SUCS-0826 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces up to 8x4 mm; 5 have mucosa and muscularis propria; 1 has only muscularis
|
Acceptable
|
|