GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2126 |
Urinary bladder
|
PAXgene |
3
|
6 pieces ~8x4mm; urothelium completely sloughed, half the pieces have layer of fat up to 50% of total thickness of specimen; representative fatty areas encircled
|
Acceptable
|
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces ~8x2mm, mucosa badly autolyzed
|
Acceptable
|
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2326 |
Stomach
|
PAXgene |
3
|
6 pieces ~8x1.5mm, mucosa up to 50% thickness of some pieces but all badly autolyzed
|
Acceptable
|
|
GTEX-SJXC
|
61-70
|
Male
|
GTEX-SJXC-2426 |
Pancreas
|
PAXgene |
3
|
2 pieces ~8x6mm, severely autolyzed/saponified. LDACC NOTE: ~80% of one aliquot is fat, encircled
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0126 |
Heart
|
PAXgene |
0
|
2 pieces 8x7 & 8x6 mm; contraction bands (hypoxia) no scars or infarcts; no adipose
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0226 |
Coronary artery
|
PAXgene |
0
|
2 pieces 4x2 & 3x2 mm; larger has 50% adherent adipose; smaller has <10% adipose; minimal plaque
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0326 |
Aorta
|
PAXgene |
1
|
6 pieces up to 9x2 mm; no adipose; no plaques
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0426 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces up to 5x4 mm; clean no adipose or submucosa
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0526 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces up to 7x2 mm; all with good squamous mucosa
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0626 |
Stomach
|
PAXgene |
1
|
6 pieces up to 9x4 mm; all with well preserved mucosa; gastric gland dilatation.
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0726 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 piece 8x8 & 9x7 mm; several small ducts; 99% adipose
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0826 |
Urinary bladder
|
PAXgene |
2
|
6 pieces up to 8x4 mm; mucosa is variably preserved: some areas well and some sloughed
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-0926 |
Prostate
|
PAXgene |
1
|
2 pieces 8x8 & 7x7 mm; well preserved glands
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1026 |
Testis
|
PAXgene |
1
|
2 pieces 8x6 & 7x5 mm; spermatogenesis throughout
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 8x4 mm; well preserved mucosa; well visualized ganglion cells
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1226 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 7x4 mm; thin remnant of subcutaneous fat
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 9x8 & 9x7 mm; central holes (unfixed); ~10% fibrous stroma
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1426 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces 10x7 & 8x6 mm; minimal adipose
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1526 |
Artery - tibial
|
PAXgene |
0
|
2 pieces 5x2 & 3x2 mm; larger with an artery and vein; other with artery. clean, no adherent adipose, no lesions
|
Acceptable
|
|
GTEX-SNMC
|
21-40
|
Male
|
GTEX-SNMC-1626 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces 5x3 & 2x2 mm; minimal adipose
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0126 |
Spleen
|
PAXgene |
1
|
2 pieces 9x8 & 7x6 mm; focally congested
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces 11x6 & 9x4 mm; focus of blood vessels at edge of one aliquot
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0326 |
Aorta
|
PAXgene |
1
|
6 pieces up to 9x4 mm; no adventitial adipose
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0426 |
Lung
|
PAXgene |
1
|
2 pieces 12x8 & 7x5 mm; patchy atelectasis
|
Acceptable
|
|
GTEX-SNOS
|
41-50
|
Male
|
GTEX-SNOS-0526 |
Urinary bladder
|
PAXgene |
1
|
6 pieces up to 10x5 mm; mucosa not in sections
|
Acceptable
|
|