GTEX-QV44
|
51-60
|
Male
|
GTEX-QV44-1825 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 14x11 & 13x13 mm; large central holes; only outer 1-2 mm rim appears fixed; should have been labeled 1825
|
Acceptable
|
|
GTEX-QV44
|
51-60
|
Male
|
GTEX-QV44-1926 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 9x3 mm; moderate tissue tears
|
Acceptable
|
|
GTEX-QV44
|
51-60
|
Male
|
GTEX-QV44-2026 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces 12x8&9x9 mm; 10% adipose in 1; severe tissue tears
|
Acceptable
|
|
GTEX-QV44
|
51-60
|
Male
|
GTEX-QV44-2126 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces 11x5&8x4 mm; 60% adipose
|
Acceptable
|
|
GTEX-QV44
|
51-60
|
Male
|
GTEX-QV44-2226 |
Artery - tibial
|
PAXgene |
1
|
2 arteries ~4 mm and 2 veins; minimal intimal thickening
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0126 |
Nerve - tibial
|
PAXgene |
1
|
2 ~6x4mm aliquots, both with ~0.5mm rim of adherent fat
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0226 |
Artery - tibial
|
PAXgene |
1
|
2 ~2.5mm d. aliquots; excellent clean specimens
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0326 |
Thyroid gland
|
PAXgene |
1
|
2 ~8x6.5mm aliquots
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0426 |
Testis
|
PAXgene |
2
|
2 ~8.5x7.5mm aliquots. Leydig cells seem unusually prominent. Spermatogenesis assessment hampered by unusually poor preservation
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 ~8.5x8mm aliquots; no visible ductal elements. Extreme separation of sections
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0626 |
Lung
|
PAXgene |
1
|
2 ~8.5x8mm aliquots, minimal congestion
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0726 |
Coronary artery
|
PAXgene |
1
|
2 ~3mm d aliquots, ~60% occlusion by atherosclerotis deposits, calcified
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0826 |
Heart
|
PAXgene |
1
|
2 ~7.5x5.5mm aliquots, early ischemic changes (contraction bands)
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0926 |
Aorta
|
PAXgene |
0
|
6 ~7x2mm pieces, several with up to 0.5mm layer of adherent serosal adipose/fibrous tissue
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 ~6x1.5mm pieces. Squamous mucosa is ~10-15% of thickness
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1126 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~8x3mm pieces
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1226 |
Spleen
|
PAXgene |
2
|
2 ~8.5x6mm aliquots; red pulp markedly congested
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1326 |
Adrenal glands
|
PAXgene |
1
|
2 ~12x3.5mm aliquots. Adherent 1mm layer of fat on both
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1426 |
Kidney - cortex
|
PAXgene |
1
|
6 ~7x3.5mm pieces; glomeruli and tubules reasonably well- preserved
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1526 |
Kidney - cortex
|
PAXgene |
1
|
2 ~7x7mm aliquots; one all cortex, one is 90% cortex and 10% medulla—may be used if reclassified as renal cortex. Glomeruli and tubules reasonably well preserved
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1626 |
Pancreas
|
PAXgene |
1
|
2 ~8x8mm aliquots; one is >80% fat; cannot use as there is no way of knowing which is which in LDACC samples
|
Unacceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1726 |
Muscle, skeletal
|
PAXgene |
0
|
2 ~9x7.5mm aliquots. Interstitial fat ~10% of specimens
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1826 |
Liver
|
PAXgene |
1
|
2 ~8x8mm aliquots, prominent congestion
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1926 |
Stomach
|
PAXgene |
1
|
6 8x2.5mm pieces; mucosa well preserved generally, 20-30% of thickness
|
Acceptable
|
|
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2026 |
Colon, transverse
|
PAXgene |
2
|
6 ~8x2mm pieces; mucosa is 10-20% of thickness
|
Acceptable
|
|