GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0326 |
Coronary artery
|
PAXgene |
1
|
2 aliquots, one ~3x2mm, clean, one ~1.6x0.5mm embedded in 3x2mm adipose tissue. See comment below
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0426 |
Aorta
|
PAXgene |
1
|
6 ~9x1mm pieces. Minimal atherosclerosis
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0526 |
Lung
|
PAXgene |
2
|
2 ~ 8.5x7mm aliquots, one with focal fibrosis/consolidation—pending slide review
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces all muscularis, ~7x3mm
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces with mucosa, ~4 x 7mm, mucosa ~25% of thickness
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0826 |
Pancreas
|
PAXgene |
1
|
2 ~8.5x7.5mm aliquots. Exceptionally well-preserved; Islets appear reduced in number
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0926 |
Colon, transverse
|
PAXgene |
2
|
6 ~4.5x3.5mm pieces; mucosa variably preserved, 5-10% of thickness
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1026 |
Urinary bladder
|
PAXgene |
1
|
6 ~ 8x3.5mm pieces. Urothelium completely sloughed; detrussor muscle and fat only
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1126 |
Prostate
|
PAXgene |
1
|
2 ~8x8mm aliquots. Glandular hyperplasia
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1226 |
Stomach
|
PAXgene |
1
|
5 ~6.5x3.5mm pieces; mucosa exceptionally well-preserved and ~15-20% of thickness
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1326 |
Thyroid gland
|
PAXgene |
1
|
Incorrect tissue, under-fixed adipose tissue only
|
Unacceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1426 |
Testis
|
PAXgene |
1
|
2 ~10x8mm aliquots, one with area of central under-fixation
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1526 |
Skin, leg
|
PAXgene |
1
|
6 ~ 7x3.5 pieces; squamous mucosa is ~1.5—2% of thickness
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1626 |
Adipose tissue
|
PAXgene |
1
|
2 ~ 10x11 mm aliquots, areas of central under-fixation
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1726 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~ 10x7mm aliquots, ~15% interfascicular fat
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1826 |
Nerve - tibial
|
PAXgene |
1
|
2 ~4x3.5mm pieces, relatively clean
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-1926 |
Artery - tibial
|
PAXgene |
1
|
2 ~ 2x1mm pieces, relatively clean
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-0126 |
Adrenal glands
|
PAXgene |
1
|
2 pieces up to 9x2.8 mm; 6x1 mm adipose on 1 aliquot’s suface; 10% adipose on other
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-0226 |
Spleen
|
PAXgene |
1
|
2 pieces about 7mm sq; large infarcts, 15 and 20% of aliquots; several thrombosed arteries, large and small; thickened capsule (0.25mm) along one surface and thick trabeculae. Only ~30% of splenic parenchyma present.
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-0326 |
Aorta
|
PAXgene |
1
|
6 pieces up too 10.5x1.9 mm
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-0426 |
Lung
|
PAXgene |
1
|
2 pieces, 11x7.5 & 9x6mm
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-0526 |
Heart
|
PAXgene |
1
|
2 pieces, 8x6mm
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-0626 |
Coronary artery
|
PAXgene |
1
|
2 pieces up to 4.5x5mm, large non-occlusive atheromatous plaques; ~3.7x1.5 mm adipose tissue on exterior of each aliquot
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-0726 |
Thyroid gland
|
PAXgene |
1
|
2 pieces 9x9 & 12x8 mm
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-0826 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 7.7x5.2 mm; tissue tears
|
Acceptable
|
|