GTEX-1S82Z
|
21-40
|
Female
|
GTEX-1S82Z-1326 |
Pancreas
|
PAXgene |
0
|
2 pieces, adipose tissue, no pancratic parenchyma
|
Unacceptable
|
|
GTEX-1S82Z
|
21-40
|
Female
|
GTEX-1S82Z-1526 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, no target muscularis, fragements of gastric mucosa, predominantly adipose tissue
|
Unacceptable
|
|
GTEX-1S82Z
|
21-40
|
Female
|
GTEX-1S82Z-2026 |
Colon, sigmoid
|
PAXgene |
1
|
5 pieces, fragmented, target muscularis present but < 50% of specimen, ~30-35%
|
Unacceptable
|
|
GTEX-1S83E
|
41-50
|
Male
|
GTEX-1S83E-1526 |
Ileum
|
PAXgene |
2
|
4 pieces; moderate to severe mucosal autolysis; residual target lymphoid aggregates are ~10% of tissue; non-target muscularis present
|
Unacceptable
|
|
GTEX-1S83E
|
41-50
|
Male
|
GTEX-1S83E-2026 |
Prostate
|
PAXgene |
1
|
2 pieces; mostly fibromuscular stroma and nerves; surface urethral epithelium (arrows)
|
Unacceptable
|
|
GTEX-N7MS
|
61-70
|
Male
|
GTEX-N7MS-0725 |
Coronary artery
|
PAXgene |
1
|
Artery <2% of specimen
|
Unacceptable
|
|
GTEX-N7MS
|
61-70
|
Male
|
GTEX-N7MS-1726 |
Pancreas
|
PAXgene |
1
|
No parenchyma, fat only
|
Unacceptable
|
|
GTEX-NL3G
|
61-70
|
Female
|
GTEX-NL3G-2026 |
Fallopian tube
|
PAXgene |
1
|
Not tube; probably broad ligament
*Original specimen not tube
(See Issue below); no need for LDACC to process current specimen.
|
Unacceptable
|
|
GTEX-O5YT
|
21-40
|
Male
|
GTEX-O5YT-2026 |
Prostate
|
PAXgene |
0
|
appears to be seminal vesicle, not prostate; glands = only 4% of aliquot
|
Unacceptable
|
|
GTEX-O5YU
|
51-60
|
Male
|
GTEX-O5YU-1926 |
Stomach
|
PAXgene |
3
|
too autolyzed for mucosal study
|
Unacceptable
|
|
GTEX-O5YU
|
51-60
|
Male
|
GTEX-O5YU-2126 |
Urinary bladder
|
PAXgene |
3
|
epithelium totally autolyzed and sloughed
|
Unacceptable
|
|
GTEX-O5YV
|
61-70
|
Female
|
GTEX-O5YV-2126 |
Urinary bladder
|
PAXgene |
3
|
3; most epithelium sloughed
|
Unacceptable
|
|
GTEX-OHPJ
|
61-70
|
Male
|
GTEX-OHPJ-0826 |
Coronary artery
|
PAXgene |
0
|
No artery present: myocardium + fat. Minute (0.5mm intramuscular vessel noted
|
Unacceptable
|
|
GTEX-OHPM
|
51-60
|
Male
|
GTEX-OHPM-2026 |
Prostate
|
PAXgene |
0
|
Not prostate; seminal vesicle
|
Unacceptable
|
|
GTEX-OOBK
|
41-50
|
Male
|
GTEX-OOBK-1726 |
Nerve - tibial
|
PAXgene |
1
|
Pieces of adipose and connective tissue; no nerve present
|
Unacceptable
|
|
GTEX-OOBK
|
41-50
|
Male
|
GTEX-OOBK-1826 |
Artery - tibial
|
PAXgene |
1
|
Trace shreds of fibroadipose tissue; no artery present
|
Unacceptable
|
|
GTEX-OXRL
|
51-60
|
Male
|
GTEX-OXRL-1926 |
Urinary bladder
|
PAXgene |
1
|
Fatty fibromuscular and neural tissue, no sign of surface epithelium; 3 pieces, origin unclear; 6x2mm.
|
Unacceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1226 |
Pancreas
|
PAXgene |
1
|
Under -fixed adipose tissue only, no pancreas
|
Unacceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1526 |
Fallopian tube
|
PAXgene |
1
|
No tube: post menopausal ovary, 9.3x7.1mm
|
Unacceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1626 |
Ovary
|
PAXgene |
1
|
Not ovary: fibrovascular, adipose, and neural tissue
|
Unacceptable
|
|
GTEX-P44G
|
21-40
|
Male
|
GTEX-P44G-1326 |
Esophagus - muscularis
|
PAXgene |
1
|
3 ~8x3.5mm pieces of fibro connective tissue, uncertain provenance.
|
Unacceptable
|
|
GTEX-P44G
|
21-40
|
Male
|
GTEX-P44G-1426 |
Esophagus - mucosa
|
PAXgene |
1
|
Three ~5mm tissue fragments. ? origin. No mucosa seen
|
Unacceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2326 |
Fallopian tube
|
PAXgene |
1
|
Not tube, fibrovascular tissue
|
Unacceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2626 |
Thyroid gland
|
PAXgene |
1
|
8x7mm- Not thyroid—capsule and peripheral sinuses; favor lymph node
|
Unacceptable
|
|
GTEX-P4PQ
|
51-60
|
Male
|
GTEX-P4PQ-1826 |
Artery - tibial
|
PAXgene |
1
|
Not artery; 2 ~1.2mm pieces peripheral nerve with 0.5mm rim of fat
|
Unacceptable
|
|