GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-0826 |
Coronary artery
|
PAXgene |
0
|
>50% of aliquot is adipose tissue
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-0926 |
Heart
|
PAXgene |
1
|
Patchy hypereosinophilia (ischemia). Central fracture artifact, possible underfixation. Refixation confirms initial poor fixation.
8.9x9.8mm
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1026 |
Lung
|
PAXgene |
1
|
Atelectasis
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1126 |
Aorta
|
PAXgene |
1
|
endothelium sloughed. 11 x 1.5mm
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1226 |
Spleen
|
PAXgene |
1
|
Moderate congestion
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1326 |
Esophagus - muscularis
|
PAXgene |
0
|
well-visualized ganglion cells
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1426 |
Esophagus - mucosa
|
PAXgene |
1
|
Squamous mucosa with prominent muscularis mucosae
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1526 |
Pancreas
|
PAXgene |
1
|
9 x 9 mm
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1626 |
Stomach
|
PAXgene |
2
|
1 of the 3 pieces has poor mucosal preservation
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1726 |
Colon, transverse
|
PAXgene |
3
|
Severe mucosal autolysis; sparse mucosa
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1826 |
Prostate
|
PAXgene |
1
|
Moderate atrophy. 10x8.6mm
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1926 |
Urinary bladder
|
PAXgene |
2
|
1 of the 3 pieces has little mucosa
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0126 |
Skin, leg
|
PAXgene |
1
|
Epidermis is ~2-3% of specimen thickness. Patchy areas of soft tissue (deep) are poorly fixed.
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0226 |
Adipose tissue
|
PAXgene |
1
|
18x11mm. Central 80% is unfixed
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0326 |
Heart
|
PAXgene |
1
|
9.4x7mm. Clean specimen. Diffuse contraction bands + nuclear hypertrophy c/w mild ischemic changes
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0426 |
Aorta
|
PAXgene |
1
|
Specimens average 1.8mm thickness, clean sections.
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0526 |
Lung
|
PAXgene |
1
|
9 x 14mm. Diffuse mild edema.
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
Epithelial thickness 400-500 microns, 20-30% of section thickness. Focal soft tissue areas appear underfixed
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
4x9mm. Poor fixation, cracks and separation of sections.
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0826 |
Liver
|
PAXgene |
1
|
11.2x 8.3mm. About 10% macrovesicular steatosis.
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-0926 |
Spleen
|
PAXgene |
2
|
9.7x5.5mm. Foci appear poorly fixed.
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-1026 |
Pancreas
|
PAXgene |
1
|
11.2x8.3mm. Well preserved, less than 5% fat.
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-1426 |
Colon, transverse
|
PAXgene |
2
|
Much of specimen also poorly fixed (adipose portions—separation and fragmenting of sections. Mucosal thickness averages 150-200 microns, ~ 10% specimen thicknesss
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-1526 |
Stomach
|
PAXgene |
1
|
Extremely well preserved. 1 of 4 pieces with little-no mucosa, which averages .8mm thickness in 3 pieces—two of which are 30-50%mucosa in thickness. Focal adipose areas underfixed.
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-1626 |
Muscle, skeletal
|
PAXgene |
0
|
17 x 9mm specimen, minimal fat.
|
Acceptable
|
|