GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 11x9.5 & 10x7mm; larger piece has central hollow defect >50% of aliquot
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1526 |
Uterus
|
PAXgene |
1
|
2 pieces, 10x8 & 8.5x8mm; one has thin endometrium, other has no endometrium on this cut
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1726 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 6x3mm; all have full thickness with good mucosa
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1826 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 9.5x4mm; 3 are full thickness, other 3 are muscularis only with adjacent submucosal adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1926 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 9x5 & 7x7mm; ducts and immature lobules
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-2026 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 1.5x2.5mm & 2x1 mm; consists of nerves not artery, the smaller piece encased in ~60% adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-2126 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 2x1.5mm & 2x4mm; ~20% adjacent adipose
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-0226 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces ~7x2mm. Squamous epithelium is ~2-3% of thickness
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-0326 |
Skin, leg
|
PAXgene |
1
|
6 pieces ~7x2mm. Squamous epithelium is 2-3% thickness
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-0426 |
Adipose tissue
|
PAXgene |
1
|
2 pieces ~9x6mm
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-0526 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces ~6x6mm, minimal interstitial fat
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-0626 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~3.5m d. Good clean specimens
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-0726 |
Artery - tibial
|
PAXgene |
1
|
2 pieces ~2.5mm d. Good clean specimens; Monckeberg's medial sclerosis present, foci encircled
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces ~6x1.5mm. Squamous mucosa is 10-15% thickness, well-preserved
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1126 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces ~7x3mm
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1326 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces ~7x3mm. All muscle, well preserved
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1626 |
Liver
|
PAXgene |
1
|
2 pieces ~7x6mm. Diffuse macrovesicular steatosis involves ~30% of parenchyma
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1726 |
Pancreas
|
PAXgene |
1
|
2 pieces ~9x6mm. Minimal fat, well preserved. Islets rare but visible, representative ones encircled
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-1826 |
Omentum
|
PAXgene |
1
|
2 pieces ~8x6mm
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces ~8x6mm. No ductal elements noted
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2426 |
Stomach
|
PAXgene |
1
|
6 pieces ~6x2.5mm. Mucosa variably well-poorly preserved, up to 30-40 thickness, ~700 microns
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 9x6 & 10x9mm; myofibers pale compared to other heart specimen; BSS notes "mislabeled solution"
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0326 |
Heart
|
PAXgene |
1
|
2 pieces, 8x7 & 8x7mm; no adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0426 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 8x4mm; all except the smallest are free of subcutaneous adipose
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-0526 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 6x3.5 & 5x3mm; 10-20% surrounding adipose
|
Acceptable
|
|