GTEX-UJHI
|
51-60
|
Female
|
GTEX-UJHI-1726 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 10x6.5 & 10x6mm; <5% extraneous adipose
|
Acceptable
|
|
GTEX-UJHI
|
51-60
|
Female
|
GTEX-UJHI-1826 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 3x2.5 & 5.5x2mm;~10% external adipose
|
Acceptable
|
|
GTEX-UJHI
|
51-60
|
Female
|
GTEX-UJHI-1926 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 3 & 3mm in diameter; no plaques, no calcium, no extraneous adipose
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, ~8x8mm, moderate congestion
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-0226 |
Adrenal glands
|
PAXgene |
1
|
2 pieces ~11x6mm, well preserved; promient medulla presentp to 2mm d., and encircled in both. Abundant adherent fat up to ~3mm on both
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-0326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, ~11x7mm
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces,` 2mm d subtotally occlusive atherosclesosis. Adherent fat up to 1.5 mm in both
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-0526 |
Heart
|
PAXgene |
1
|
2 pieces, patchy fibrotic infarcts present in both, encircled
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-0626 |
Aorta
|
PAXgene |
1
|
6 pieces, ~9x1.5mm, adherent fat in several, up to 1mm thick
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-0726 |
Lung
|
PAXgene |
1
|
2 pieces, ~12x6mm bronchial mucosa seen, encircled. Minimal congestion, well preserved
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-1026 |
Esophagus - muscularis
|
PAXgene |
1
|
7 pieces ~8x4mm
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-1126 |
Pancreas
|
PAXgene |
1
|
2 pieces, ~11x9mm, well preserved, ~20% interstitital and adherent fat. Islets well- visualized, representative ones encircled
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-1226 |
Stomach
|
PAXgene |
1
|
6 pieces, ~6x3mm mucosa remarkably well-preserved, up to 600 microns thick
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-1326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, ~6x3mm mucosa remarkably well-preserved, up to 500 microns thick
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-1426 |
Prostate
|
PAXgene |
1
|
2 pieces, ~9x7mm glandular hyperplasia and cystic atrophy
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-1626 |
Skin, leg
|
PAXgene |
1
|
6 pieces, ~6x3mm squamous mucosa is ~2-3% of thickness or ~50 microns thick
|
Acceptable
|
|
GTEX-UJMC
|
51-60
|
Male
|
GTEX-UJMC-1726 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, ~10x9mm
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, 7x7 & 9x8mm
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 8x8 & 9x8mm
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0726 |
Pancreas
|
PAXgene |
1
|
2 pieces, 9x8 & 9x7mm; very well preserved; lots of islets; 40-50% adjacent adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0826 |
Lung
|
PAXgene |
1
|
2 pieces, 10x6.5 & 7x6mm; patchy interstitial fibrosis and pneumonitis
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-0926 |
Liver
|
PAXgene |
1
|
2 pieces, 8x8 & 8x7mm; no steatosis, no fibrosis
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 5.5x2.5mm; mild chronic inflammation (correlates with history of gastric reflux)
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1126 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, up to 9x3mm; good preservation; no renal lesions
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1226 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 13x10 & 10x8mm; central portion is hollow, presumably not fixed; outer rim of tissue is from 0.1 to 3 mm thick; the two pieces contain about 40% muscle and 60% adipose interspersed; because of the Trisomy 17 diagnosis I recommend keeping this although for GTEx purposes it is not acceptable
|
Acceptable
|
|