GTEX-S7SF
|
21-40
|
Female
|
GTEX-S7SF-1226 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces 13x6 & 10x7 mm; atrophic, fibrotic some residual lobules; ~25% adipose in 1 piece
|
Acceptable
|
|
GTEX-S7SF
|
21-40
|
Female
|
GTEX-S7SF-1526 |
Cervix - endocervix
|
PAXgene |
1
|
4 pieces up yo 7x3 mm; 2 have glands, 2 have no epithelium; consider it endocervix; relabel
|
Acceptable
|
|
GTEX-S7SF
|
21-40
|
Female
|
GTEX-S7SF-1626 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 9x4.5 mm; subcutaneous fat is up to 2.5 mm thick
|
Acceptable
|
|
GTEX-S7SF
|
21-40
|
Female
|
GTEX-S7SF-1726 |
Cervix - endocervix
|
PAXgene |
1
|
4 pieces up to 5x5 mm; 1 piece has both squamous and glandular mucosa; others are without epithelium
|
Acceptable
|
|
GTEX-S7SF
|
21-40
|
Female
|
GTEX-S7SF-1826 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 16x14 & 14x12 mm; aliquots are too large and have central unfixed areas. Each contains 1.5 mm blood vessels
|
Acceptable
|
|
GTEX-S7SF
|
21-40
|
Female
|
GTEX-S7SF-1926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 6x4 mm; good mucosal morphology; full thickness wall
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~7x3mm
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, ~6x3mm. Squmous mucosa well-preserved, ~8-10% of thickness
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0726 |
Pancreas
|
PAXgene |
1
|
2 aliquots ~8x6mm. LDACC NOTE: 2 foci of low grade ductal dyplasia, ~0.3mm in dimensions noted in one aliquot, ensquared. Good islets, representative ones encircled. Overall excellent preservation with minimal fat.
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0826 |
Stomach
|
PAXgene |
1
|
6 pieces, ~10x2mm. Mucosa extremely well-preserved, up to 50% of thickness in well-oriented pieces.
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, ~8x3mm, only three with visible mucosa, poorly oriented
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1026 |
Prostate
|
PAXgene |
1
|
2 aliquots, ~10x7mm, prominent nodular glandular hyperplasia ensquared
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1126 |
Testis
|
PAXgene |
1
|
2 aliquots, ~10x8mm. Spermatogenesis appears present but reduced
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-0126 |
Spleen
|
PAXgene |
1
|
2 pieces 12x8 & 11x8 mm;
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-0226 |
Aorta
|
PAXgene |
1
|
6 pieces up to 10x1.5 mm; flat plaques; small intramural hemorrhage
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-0326 |
Pancreas
|
PAXgene |
1
|
2 pieces 9x8 & 8x4 mm; over 50% external adipose tissue
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces 4 mm arteries with virtually no sclerosis; ~20% adherent adipose
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-0526 |
Lung
|
PAXgene |
1
|
2 pieces 10x6 mm; patchy emphysema
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-0626 |
Heart
|
PAXgene |
1
|
2 pieces 11x7 & 9x5 mm; no extraneous tissue
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-0726 |
Thyroid gland
|
PAXgene |
1
|
2 pieces8x4 & 9x6 mm
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-0826 |
Ovary
|
PAXgene |
1
|
2 pieces 8x5 & 7x6 mm; very little ovarian tissue, ~ 10%.
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-1026 |
Urinary bladder
|
PAXgene |
1
|
6 pieces up to 8x5 mm; only one piece has mucosa
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 6x3 mm; all are MUCOSA,
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-1326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces up to 6x3 mm;3 are muscularis 3 are adventitia
|
Acceptable
|
|
GTEX-SE5C
|
41-50
|
Female
|
GTEX-SE5C-1426 |
Stomach
|
PAXgene |
1
|
6 pieces up to 8x5 mm; mucosa ~ 1mm. good preservation
|
Acceptable
|
|