GTEX-1R9PN
|
41-50
|
Female
|
GTEX-1R9PN-1526 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; all with mucosa as well as muscularis; LCM
|
Unacceptable
|
|
GTEX-1R9PO
|
61-70
|
Female
|
GTEX-1R9PO-1426 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces; moderately to severely autolyzed gastric mucosa and residual target muscularis (outlined)
|
Unacceptable
|
|
GTEX-1R9PO
|
61-70
|
Female
|
GTEX-1R9PO-1826 |
Ileum
|
PAXgene |
2
|
6 pieces; severely autolyzed mucosa and less than 10% residual target lymphoid aggregates; preserved muscularis
|
Unacceptable
|
|
GTEX-1RAZA
|
21-40
|
Male
|
GTEX-1RAZA-1526 |
Stomach
|
PAXgene |
1
|
6 pieces; only muscularis; no target gastric mucosa included
|
Unacceptable
|
|
GTEX-1RAZS
|
51-60
|
Male
|
GTEX-1RAZS-2426 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; mild to moderate autolysis; arterio- and arteriolo-nephrosclerosis; diabetic nephropathy; nephritis; end stage renal disease
|
Unacceptable
|
|
GTEX-1RB15
|
61-70
|
Male
|
GTEX-1RB15-0526 |
Coronary artery
|
PAXgene |
1
|
2 pieces, minute vessel, possible branch of LCA, mainly pericardial fat
|
Unacceptable
|
|
GTEX-1RB15
|
61-70
|
Male
|
GTEX-1RB15-0726 |
Esophagus - mucosa
|
PAXgene |
1
|
4 pieces, 2 with squamous mucosa, rest is fat/unknown provenance
|
Unacceptable
|
|
GTEX-1RB15
|
61-70
|
Male
|
GTEX-1RB15-1226 |
Pancreas
|
PAXgene |
1
|
2 pieces, crushed small bowel sections, not pancreas
|
Unacceptable
|
|
GTEX-1RB15
|
61-70
|
Male
|
GTEX-1RB15-1426 |
Ileum
|
PAXgene |
1
|
6 pieces, not ileum, sections of colon and muscularis
|
Unacceptable
|
|
GTEX-1RB15
|
61-70
|
Male
|
GTEX-1RB15-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, small bowel, no lymphoid aggregates, not c/w terminal ileum
|
Unacceptable
|
|
GTEX-1RB15
|
61-70
|
Male
|
GTEX-1RB15-1626 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, small bowel, fat, and muscularis, no sigmoid colon muscularis
|
Unacceptable
|
|
GTEX-1RB15
|
61-70
|
Male
|
GTEX-1RB15-1826 |
Prostate
|
PAXgene |
0
|
2 pieces, adipose tissue, unknown provenance
|
Unacceptable
|
|
GTEX-1RB15
|
61-70
|
Male
|
GTEX-1RB15-2326 |
Nerve - tibial
|
PAXgene |
0
|
1 piece, artery, not peripheral nerve; correlates with -2325.
|
Unacceptable
|
|
GTEX-1RDX4
|
51-60
|
Female
|
GTEX-1RDX4-0626 |
Vagina
|
PAXgene |
1
|
6 pieces; not vagina; most likely urinary bladder with sloughed mucosa
|
Unacceptable
|
|
GTEX-1RDX4
|
51-60
|
Female
|
GTEX-1RDX4-2026 |
Ileum
|
PAXgene |
2
|
6 pieces; several lymphoid nodules [circled], but large amounts [80%] of extraneous mucosa & submucosa; LCM
|
Unacceptable
|
|
GTEX-1RDX4
|
51-60
|
Female
|
GTEX-1RDX4-2726 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; arteriolar, arterial & glomerular sclerosis; tubules severely autolyzed; medulla sampled as well as cortex
|
Unacceptable
|
|
GTEX-1RMOY
|
51-60
|
Male
|
GTEX-1RMOY-0526 |
Coronary artery
|
PAXgene |
1
|
2 pieces; vessel walls; ~50% adipose tissue (outlined); small muscle fragment (arrow)
|
Unacceptable
|
|
GTEX-1RMOY
|
51-60
|
Male
|
GTEX-1RMOY-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; target esophageal mucosa not present; adipose tissue with fibrovascular component, nerves and muscle fragment (arrow)
|
Unacceptable
|
|
GTEX-1RMOY
|
51-60
|
Male
|
GTEX-1RMOY-1226 |
Prostate
|
PAXgene |
1
|
2 pieces; target prostate gland not present; mature adipose tissue with fibrovascular component and nerves (arrows)
|
Unacceptable
|
|
GTEX-1RMOY
|
51-60
|
Male
|
GTEX-1RMOY-1426 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; mild to moderate autolysis; target muscularis with gastric and esophageal mucosa and submucosa glands
|
Unacceptable
|
|
GTEX-1RMOY
|
51-60
|
Male
|
GTEX-1RMOY-1526 |
Ileum
|
PAXgene |
2
|
6 pieces; target lymphoid aggregates not present; moderately autolyzed mucosa, submucosa and preserved muscularis
|
Unacceptable
|
|
GTEX-1RNSC
|
61-70
|
Male
|
GTEX-1RNSC-2126 |
Ileum
|
PAXgene |
3
|
6 pieces, largely sloughed mucosa, bare trace residual target lymphoid aggregates
|
Unacceptable
|
|
GTEX-1RNTQ
|
21-40
|
Female
|
GTEX-1RNTQ-0926 |
Lung
|
PAXgene |
1
|
2 pieces; massive pneumonia; marked congestion
|
Unacceptable
|
|
GTEX-1RNTQ
|
21-40
|
Female
|
GTEX-1RNTQ-1326 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; target muscularis not well represented; stratified squamous epithelium, submucosa, submucosal glands and focal submucosal lymphocytic infiltration
|
Unacceptable
|
|
GTEX-1RNTQ
|
21-40
|
Female
|
GTEX-1RNTQ-1426 |
Ileum
|
PAXgene |
2
|
6 pieces; moderately autolyzed mucosa; 3 pieces with target lymphoid aggregates representing ~ 15% tissue(outlined) and non-target muscularis present
|
Unacceptable
|
|