GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-1226 |
Urinary bladder
|
PAXgene |
1
|
6 pieces up to 10x3.5 mm; focally sloughed epithelium
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-1326 |
Prostate
|
PAXgene |
1
|
2 pieces 13x10 & 13x7 mm; glandular and stromal hyperplasia; a few urethral structures along one side of each piece
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-1426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces 18x11 & 15x9 mm; fibroadipose tissue with no mammary ducts; excessively large aliquots with large central empty poorly fixed areas
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-1526 |
Testis
|
PAXgene |
1
|
2 pieces 10x8 & 9x9 mm; reduced spermatogenesis
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-1926 |
Nerve - tibial
|
PAXgene |
1
|
4 pieces up to 11x5 mm; ~30% adipose in and around nerve bundles
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-2026 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces 11x9 & 9x7 mm; <10% adipose;
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-0126 |
Spleen
|
PAXgene |
1
|
2 pieces 9x8 & 7x7 mm; not congested
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces12x9 & 8x8 mm; <5% adipose
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-0326 |
Aorta
|
PAXgene |
1
|
6 pieces up to 8x1.3 mm; clean adventitia
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-0426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 6x4 mm; lots of good squamous mucosa
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-0626 |
Pancreas
|
PAXgene |
1
|
2 pieces 8x7 & 7x6 mm; larger has ~20% scarring, 30% parenchyma, and 50% adipose: smaller is ~80% adipose, 20% parenchyma
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-0726 |
Stomach
|
PAXgene |
1
|
6 pieces up to 9x4 mm; 4 have well preserved oxyntic mucosa, 2 have only muscularis
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-0926 |
Ovary
|
PAXgene |
1
|
2 pieces 10x10 & 10x7 mm; atrophic, no ova, corpora albicantia
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1026 |
Fallopian tube
|
PAXgene |
1
|
2 pieces 7x4 mm; NO fallopian tube; only smooth muscle, vessels and stroma
|
Unacceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1126 |
Vagina
|
PAXgene |
1
|
6 pieces up to 10x4 mm;
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 7x4 mm; surface sloughing;
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces 9x8 & 13x10 mm; large ducts, no lobules; 80-90% adipose; central unfixed adipose especially in large piece
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1426 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 7x3.8 mm; 5 pieces have up to 1.5 mm subcutaneous adipose
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1526 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 15x13 & 13x10 mm; excessively large aliquots with large central unfixed holes
|
Acceptable
|
|
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1726 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~5mm in diameter; one with 30% surrounding adipose, other 'clean' ;
|
Acceptable
|
|
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0126 |
Spleen
|
PAXgene |
1
|
2 aliquots, ~12x8mm
|
Acceptable
|
|
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0226 |
Adrenal glands
|
PAXgene |
1
|
2 aliquots, 7x6mm. All cortex, well-preserved
|
Acceptable
|
|
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0426 |
Lung
|
PAXgene |
1
|
2 aliquots, ~9x7mm. Diffuse mild chronic active pneumonitis and edema
|
Acceptable
|
|
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0526 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~9x3mm.
|
Acceptable
|
|
GTEX-S4Q7
|
21-40
|
Male
|
GTEX-S4Q7-0826 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, ~9x3mm. Mucosa reasonably well-preserved, ~10% of thickness
|
Acceptable
|
|