GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0226 |
Thyroid gland
|
PAXgene |
1
|
2 aliquots, ~ 9xx8mm. Microglandular adenomatoid nodule in squares; focal skeletal muscle encircled. LDACC ALERT
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0326 |
Lung
|
PAXgene |
1
|
2 aliquots, ~ 9x6mm. Mild congestion; prominent mucoid secretions in bronchus
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~ 7x4mm
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, ~6x2mm. Squamous mucosa is ~20% of thickness
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0926 |
Urinary bladder
|
PAXgene |
1
|
6 pieces, all adipose tissue, unknown origin. Cannot be used for GTEx study
|
Unacceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1026 |
Uterus
|
PAXgene |
1
|
2 aliquots, ~ 9x7mm. All myometrium, no visible endometrial glands or stroma
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1126 |
Cervix - ectocervix
|
PAXgene |
1
|
4 aliquots, ~ 12x9mm. 3 show focal squamous mucosa, ~100 microns thick, encircled; one with single layer endocervical mucosa, 10 microns thick, en squared
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1226 |
Vagina
|
PAXgene |
1
|
6 pieces, ~ 5x4mm, squamous mucosa is ~ 2-3% of thickness, present at least focally in 5 of 6 aliquots
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1326 |
Cervix - endocervix
|
PAXgene |
1
|
4 aliquots, ~ 7x7mm. One shows endocervical surface mucosa with early squamous metaplasia encircled, and deeper endocervical glands en squared; other 3 with no glands, only stroma
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, ~7x3.5mm. Mucosa reasonably well preserved, ~8-10% of thickness
|
Acceptable
|
|
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 aliquots, ~8x5mm. Focal areas of fibrocystic (microcystic) change encircled; normal TDLUs en squared
|
Acceptable
|
|
GTEX-S3LF
|
61-70
|
Male
|
GTEX-S3LF-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces ~8x2mm. Squamous epithelium is ~2-3% of thickness
|
Acceptable
|
|
GTEX-S3LF
|
61-70
|
Male
|
GTEX-S3LF-0226 |
Adipose tissue
|
PAXgene |
1
|
2 aliquots, ~8x6mm
|
Acceptable
|
|
GTEX-S3LF
|
61-70
|
Male
|
GTEX-S3LF-0326 |
Artery - tibial
|
PAXgene |
1
|
2 aliquots, 4x3mm. Agglomeration of vessels/?bifurcation of 2 vessels, acceptable. Small amount interstital fat
|
Acceptable
|
|
GTEX-S3LF
|
61-70
|
Male
|
GTEX-S3LF-0426 |
Nerve - tibial
|
PAXgene |
1
|
2 aliquots, ~4x2.5mm. One has rim of fat, ~0.5mm, discontinuous
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-0126 |
Adrenal glands
|
PAXgene |
1
|
2 pieces 18x5 & 12x9 mm; cortex; ~20% adipose
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-0226 |
Coronary artery
|
PAXgene |
1
|
2 pieces 5x4 & 3x2 mm; larger with focally calcified plaque & 50% occlusion & 10% adipose
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-0326 |
Aorta
|
PAXgene |
1
|
6 pieces up to 10x2 mm; mild linear medial calcification; minimal adipose
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-0426 |
Heart
|
PAXgene |
1
|
2 pieces 10x9 & 8x8 mm; minimal adipose
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-0626 |
Spleen
|
PAXgene |
1
|
2 pieces 11x7 & 8x8; no congestion
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-0726 |
Thyroid gland
|
PAXgene |
1
|
2 pieces 14x7 & 14x^ mm; severe Hashimoto's thyroiditis
|
Unacceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-0826 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces up to 10x4.4 mm;
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-0926 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 8x3.2 mm;
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-1026 |
Stomach
|
PAXgene |
1
|
7 pieces up to 9x3 mm; chronic gastritis; oxyntic mucosa
|
Acceptable
|
|
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-1126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 11x4 mm; each has well preserved mucosa and all layers intact
|
Acceptable
|
|