GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2026 |
Pancreas
|
PAXgene |
2
|
2 pieces; some moderate but mostly severe parenchymal autolysis; 50% internal/external fat (outlined) and wide fibrous band (arrows)
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2126 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; well trimmed target muscularis
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2226 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; moderate to severe mucosal autolysis and preserved muscularis
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2326 |
Ileum
|
PAXgene |
2
|
6 pieces; autolyzed mucosa, preserved muscularis and residual target lymphoid aggregates
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; target muscularis and thin rim of serosa with fat
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2526 |
Testis
|
PAXgene |
1
|
2 pieces; thick tubular basement membrane; interstitial fibrosis; lack of spermatogenesis and increase of Sertolli cells;
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2626 |
Prostate
|
PAXgene |
2
|
2 pieces; fibromuscular stroma and glandular component with sloughed epithelial cells; amylaceous bodies
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2726 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; renal cortex not present; cirrhotic liver
|
Unacceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2826 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; essentially well trimmed skin with focal internal fat (outlined); ~45 micron thick epidermis
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2926 |
Pituitary gland
|
PAXgene |
1
|
1 piece; 20% neurohypophysis and 80% adenohypophysis
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-3026 |
Brain - cerebellum
|
PAXgene |
1
|
5 pieces; mild to moderate autolysis; focus of attached meninges (arrow); Purkinje cells present
|
Acceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-3126 |
Brain - cortex
|
PAXgene |
1
|
4 fragmented pieces; mild to moderate autolysis; attached small fragments of meninges outlined
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0126 |
Skin, leg
|
PAXgene |
0
|
6 pieces, trace dermal fat; squamous epithelium is ~30-40 microns
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, ~5-10% fascia/vascular elements; rep delineated
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, fragemented; ~5-10% interstitial fat/vascular elements; rep delineated
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0426 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, partial rim of trace adherent fat, up to ~0.3mm
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0526 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, no significant atherosis or adherent fat; focal Monckeberg sclerosis, encircled
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0626 |
Minor salivary glands
|
PAXgene |
0
|
2 pieces, ~80% glandular elements, delineated
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0726 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, micronodular goitre; ~1mm colloid cyst noted
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0826 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, gynecomastoid stromal/ductal (rep delineated) hyperplasia
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-0926 |
Lung
|
PAXgene |
1
|
2 pieces, chronic congestion, mild edema, atalectasis
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-1026 |
Stomach
|
PAXgene |
1
|
6 pieces, mucosa very well preserved, valuable specimen, up to ~1mm, 30-90% of thickness
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-1126 |
Spleen
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-1226 |
Pancreas
|
PAXgene |
1
|
2 pieces. ductal proliferation and fibrosis consistent with prior pancreatitis (rep foci ensquared); islets fairly well preserved, rep encircled. Reviewed by PRC consensus.
|
Acceptable
|
|
GTEX-1R9K5
|
51-60
|
Male
|
GTEX-1R9K5-1326 |
Heart
|
PAXgene |
1
|
2 pieces, moderate interstitial fibrosis/chronic ischemic change
|
Acceptable
|
|