GTEX-P4QR
|
61-70
|
Male
|
GTEX-P4QR-2226 |
Colon, transverse
|
PAXgene |
3
|
6 ~7x2.5mm pieces. Epithelium totally autolyzed, stroma partially sloughed
|
Acceptable
|
|
GTEX-P78B
|
41-50
|
Female
|
GTEX-P78B-2126 |
Urinary bladder
|
PAXgene |
3
|
3 epi, 1 wall, 6 ~9x2 mm pieces. Almost totally sloughed epithelium
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-0526 |
Spleen
|
PAXgene |
3
|
2 ~10x9mm pieces. Under fixed.
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1726 |
Adrenal glands
|
PAXgene |
3
|
2 ~7x3mm pieces, one fragmented. ~15% fat, saponified
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2326 |
Fallopian tube
|
PAXgene |
3
|
2 ~ 4mm d. pieces. Mucosa totally autolyzed/sloughed
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2426 |
Uterus
|
PAXgene |
3
|
2 ~11x3.5mm pieces, mainly myometrium. 1 aliquot has a ~ 3x1.6mm focus of autolyzed atrophic glands/stroma
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-1526 |
Kidney - cortex
|
PAXgene |
3
|
6 ~ 6.5x3mm pieces. Marked tubular and moderate-marked glomerular autolysis, / ? infarction in one aliquot
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-1626 |
Kidney - medulla
|
PAXgene |
3
|
2 ~10x6.3mm pieces. Markedly autolyzed
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-1826 |
Adrenal glands
|
PAXgene |
3
|
2 ~12x3mm pieces, 80% fat. Autolyzed cortex in a ~0.5mm strip along one edge of both aliquots
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2026 |
Stomach
|
PAXgene |
3
|
6 pieces, ~6x3.5mm, mucosa is 25-30% of thickness
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2126 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, ~7x2.5mm, mucosa totally autolyzed and largely sloughed
|
Acceptable
|
|
GTEX-PSDG
|
41-50
|
Male
|
GTEX-PSDG-1826 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, ~10x2.5mm, poorly preserved mucosa
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-1226 |
Pancreas
|
PAXgene |
3
|
2 pieces,~9.6x7mm w/50% fat; 5.6x7.7mm w/10% fat
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces,~7x1.5mm; mucosa poorly preserved
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0626 |
Colon, transverse
|
PAXgene |
3
|
6 ~9x2mm pieces. Mucosa sloughed in >50%; where present, badly autolyzed, score three, ~10% of thickness. Areas of poor/under-fixation
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0726 |
Kidney - medulla
|
PAXgene |
3
|
2 ~10x8mm aliquots. Contaminant glomeruli in one aliquot, ~40%. Chronic/fibrosing intersitital nephritis; focal areas of ‘thyroidization’.
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0826 |
Kidney - cortex
|
PAXgene |
3
|
6 ~6x5mm pieces. Chronic interstitial nepthritis. Both glomeruli and tubules show severe autolysis
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1926 |
Stomach
|
PAXgene |
3
|
3(epithelium); 1-2 (muscularis); 6 ~ 7x2mm pieces; mucosa near totally autolysis, ~25-30% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1426 |
Spleen
|
PAXgene |
3
|
2 8x7.5mm aliquots. Appears under-fixed
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1626 |
Adrenal glands
|
PAXgene |
3
|
2 aliquots ~ 20x7mm (nearly full sections), all cortex but generally badly autolyzed
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1726 |
Kidney - cortex
|
PAXgene |
3
|
6 ~6.3x3mm pieces. Tubules badly autolyzed
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1826 |
Kidney - medulla
|
PAXgene |
3
|
2 ~6.5x6mm pieces, both with numerous glomeruli (50% or more of both aliquots)
|
Unacceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-1926 |
Stomach
|
PAXgene |
3
|
2 aliquots, ~8.5x2.5mm. Mucosa better preserved than usual for an autopsy, ~50% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces ~ 8x1.5mm. Mucosa badly autolyzed, 10-25% of thickness
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2326 |
Cervix - ectocervix
|
PAXgene |
3
|
4 ~6.5x4mm aliquots. Autolyzed endocervical glands with tunnel clusters/Nabothian cysts present
|
Acceptable
|
|