GTEX-1QP67
|
41-50
|
Female
|
GTEX-1QP67-1226 |
Ileum
|
PAXgene |
1
|
6 pieces, colon, not terminal ileum
|
Unacceptable
|
|
GTEX-1QP6S
|
41-50
|
Male
|
GTEX-1QP6S-2726 |
Ileum
|
PAXgene |
3
|
6 pieces; autolyzed mucosa and <5% residual lymphoid aggregates
|
Unacceptable
|
|
GTEX-1QP9N
|
21-40
|
Male
|
GTEX-1QP9N-0326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; 3 pieces have no mucosa, only muscularis propria, but with >90% striated muscle, not smooth muscle; 3 smaller pieces are largely fibrofatty
|
Unacceptable
|
|
GTEX-1QP9N
|
21-40
|
Male
|
GTEX-1QP9N-0626 |
Stomach
|
PAXgene |
1
|
6 pieces; muscularis only, no mucosa
|
Unacceptable
|
|
GTEX-1QP9N
|
21-40
|
Male
|
GTEX-1QP9N-0726 |
Ileum
|
PAXgene |
1
|
4 pieces; only 1 piece has lymphoid nodules; LCM
|
Unacceptable
|
|
GTEX-1QP9N
|
21-40
|
Male
|
GTEX-1QP9N-1126 |
Prostate
|
PAXgene |
0
|
2 pieces; seminal vesicle not prostate sampled
|
Unacceptable
|
|
GTEX-1R46S
|
61-70
|
Female
|
GTEX-1R46S-1926 |
Vagina
|
PAXgene |
1
|
6 pieces, fat and smooth muscle, unknown provenance. No squamous epithelium present
|
Unacceptable
|
|
GTEX-1R46S
|
61-70
|
Female
|
GTEX-1R46S-2626 |
Ileum
|
PAXgene |
3
|
6 pieces, mucosa largely sloughed, <5% target lymphoid aggregates
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-0526 |
Coronary artery
|
PAXgene |
1
|
2 pieces; myocardium; 40% and 50% external fat attached; coronary artery not identified
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; target mucosa not present; well trimmed muscularis
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; non target stratified squamous epithelium with lamina propria (outlined) and target muscularis
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-0826 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; non target gastric and esophageal mucosa with lamina propria; insufficient representation of target muscularis (outlined)
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-0926 |
Stomach
|
PAXgene |
2
|
6 pieces; mainly muscularis and tiny fragments of gastric mucosa (outlined)
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-1326 |
Colon, transverse
|
PAXgene |
1
|
5 pieces; only tiny unattached fragment of colonic mucosa; mainly muscularis
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-1426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces;3 pieces contain mildly to moderately autolyzed non target mucosa (outlined); target muscularis present
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-1626 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; diabetic nephropathy, arterio and arteriolo-nephrosclerosis; interstitial nephritis; end stage renal disease
|
Unacceptable
|
|
GTEX-1R7EV
|
41-50
|
Male
|
GTEX-1R7EV-1826 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; lymphoid tissue (outlined) and 50% and 75% fibrovascular tissue with fat; no target thyroid gland resent
|
Unacceptable
|
|
GTEX-1R9JW
|
21-40
|
Female
|
GTEX-1R9JW-0626 |
Coronary artery
|
PAXgene |
1
|
2 pieces, not coronary artery, venous sinus and epicardial fat/myocardium
|
Unacceptable
|
|
GTEX-1R9JW
|
21-40
|
Female
|
GTEX-1R9JW-0926 |
Pancreas
|
PAXgene |
1
|
2 pieces, <5% pancreatic parenchyma, mainly fat
|
Unacceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-1626 |
Liver
|
PAXgene |
2
|
3 pieces; capsule included (arrows); advanced cirrhosis
|
Unacceptable
|
|
GTEX-1R9K4
|
61-70
|
Male
|
GTEX-1R9K4-2726 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; renal cortex not present; cirrhotic liver
|
Unacceptable
|
|
GTEX-1R9PM
|
21-40
|
Male
|
GTEX-1R9PM-1226 |
Prostate
|
PAXgene |
1
|
2 pieces. Not target prostate; seminal vesicle
|
Unacceptable
|
|
GTEX-1R9PM
|
21-40
|
Male
|
GTEX-1R9PM-1326 |
Testis
|
PAXgene |
1
|
2 pieces. Not testis. Stromal tissue of unknown provenance.
|
Unacceptable
|
|
GTEX-1R9PN
|
41-50
|
Female
|
GTEX-1R9PN-1126 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; gastric mucosa and muscularis
|
Unacceptable
|
|
GTEX-1R9PN
|
41-50
|
Female
|
GTEX-1R9PN-1326 |
Ileum
|
PAXgene |
2
|
6 pieces; colonic mucosa and wall
|
Unacceptable
|
|