GTEx Histological Images

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Case ID	Age	Gender	Specimen ID	Tissue Type	Fixative	Autolysis	Pathology Review Comments	Acceptability	Action
GTEX-1H3O1	51-60	Male	GTEX-1H3O1-1626	Pituitary gland	PAXgene	2	1 piece, adenohypophysis and dura , ~10-20% of specimen(delineated)	Acceptable
GTEX-1H3O1	51-60	Male	GTEX-1H3O1-1726	Brain - cortex	PAXgene	1	2 pieces, no abnormalities	Acceptable
GTEX-1H3O1	51-60	Male	GTEX-1H3O1-1826	Brain - cerebellum	PAXgene	1	2 pieces, no abnormalities	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0126	Muscle, skeletal	PAXgene	1	2 pieces; ~3% and 10% internal fat, rare atrophic fibers	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0226	Adipose tissue	PAXgene	1	2 pieces; mature adipose tissue <10% fibrovascular tissue	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0326	Skin, leg	PAXgene	1	6 pieces; essentially well trimmed; epidermis ~35 microns	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0426	Testis	PAXgene	1	2 pieces; arrested spermatogenesis with spared Sertoli cells; peritubular fibrosis	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0526	Artery - tibial	PAXgene	1	2 pieces; patent lumen, mild plaque and medial calcifications (outlined); attached adventitia up to 0.86mm	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0626	Nerve - tibial	PAXgene	1	2 pieces; 10% and 20% internal/external fat	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0726	Skin, suprapubic	PAXgene	1	6 pieces; essentially well trimmed with numerous empty spaces likely fixation problem (rep outlined)	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0826	Thyroid gland	PAXgene	2	2 pieces; mild interstitial fibrosis and trivial external fat (outlined)	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-0926	Aorta	PAXgene	1	6 pieces; attached adventitia up to 0.65mm; evolving sclerotic plaque	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-1026	Lung	PAXgene	2	2 pieces; marked congestion	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-1126	Spleen	PAXgene	2	2 pieces; marked congestion	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-1326	Esophagus - muscularis	PAXgene	1	6 pieces; well trimmed target muscularis	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-1426	Gastroesophageal junction	PAXgene	2	6 pieces; well trimmed target muscularis	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-1826	Adrenal glands	PAXgene	2	2 pieces; moderately to severely autolyzed adrenal cortex and medulla; 50% and 40% fat content	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-1926	Omentum	PAXgene	1	2 pieces; large central defects (? poor fixation)	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-2026	Kidney - cortex	PAXgene	2	6 pieces; moderate to severe tubular autolysis (sloughed tubular epithelium) and tubular bile casts (rep outlined); diffuse membranoproliferative glomerulonephritis (mesangial cell proliferation and capillary wall thickening)- likely secondary	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-2126	Prostate	PAXgene	1	2 pieces; mild to moderate autolysis; well preserved fibromuscular stroma and glandular component with diffusely sloughed lining epithelium	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-2226	Mammary tissue (breast)	PAXgene	1	2 pieces; dense fibrous stroma with embedded small ductal structures	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-2326	Colon, sigmoid	PAXgene	1	6 pieces; essentially well trimmed target muscularis; attached one tiny fragment of autolyzed mucosa (outlined)	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-2426	Colon, transverse	PAXgene	2	6 pieces; severly autolyzed colonic mucosa and mildly to moderately autolyzed muscularis	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-2626	Pituitary gland	PAXgene	2	1 piece; 85% adenohypophysis and 15% neurohypophysis	Acceptable
GTEX-1H3VE	41-50	Male	GTEX-1H3VE-2726	Brain - cortex	PAXgene	2	4 pieces; meningeal coverage noted in 2 of 4 pieces (arrows); ensquared portion of cerebellum	Acceptable

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