GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-1826 |
Stomach
|
PAXgene |
2
|
6 pieces; full thickness sections, muscularis is better preserved
|
Acceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-1926 |
Aorta
|
PAXgene |
1
|
6 pieces; atherosclerotic plaque; congested adventitia up to 0.5mm
|
Acceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2026 |
Prostate
|
PAXgene |
2
|
2 pieces; fibromuscular stroma and largely sloughed glandular component with scattered calcifications (outlined)
|
Acceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2126 |
Testis
|
PAXgene |
2
|
2 pieces; decreased spermatogenesis; interstitial fibrosis and sclerosis of tubules (arrows)
|
Acceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2226 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; adipose tissue with ~10% fibrocollagenous tissue; no ductal structures seen
|
Acceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2326 |
Ileum
|
PAXgene |
2
|
6 pieces; predominantly autolyzed mucosa with some residual target lymphoid aggregates (< 20% of tissue)
|
Unacceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; predominantly muscularis and submucosa with small fragment of autolyzed mucosa (arrow)
|
Unacceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2526 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; full thickness colon (target is muscularis only)
|
Unacceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2626 |
Brain - cortex
|
PAXgene |
1
|
2 pieces; one piece fragmented
|
Acceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2726 |
Brain - cerebellum
|
PAXgene |
1
|
2 pieces; Purkinje cells well visualized; congested meninges (arrows)
|
Acceptable
|
 |
GTEX-1GF9W
|
61-70
|
Male
|
GTEX-1GF9W-2826 |
Pituitary gland
|
PAXgene |
1
|
1 piece; 80% adenohypophysis and 20% neurohypophysis; dura and external fat up to 0.9mm
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; 1 piece has a 0.84 mm adenomatoid nodule (benign) or microadenoma. That piece has 50% fatty & vascular stroma
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0226 |
Minor salivary glands
|
PAXgene |
0
|
2 pieces with 3 salivary glands and >50% muscular, vascular, neural and fibrous contents;
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0326 |
Lung
|
PAXgene |
1
|
2 pieces; focal pigmented alveolar macrophages
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0426 |
Liver
|
PAXgene |
1
|
2 pieces; severe (>75%) macrovesicular steatosis
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0526 |
Spleen
|
PAXgene |
1
|
2 pieces; good lymphoid component; several large vessels
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; squamous & glandular mucosa with intestinal metaplasia (Barrett esophagus) no dysplasia
|
Unacceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
4 small pieces, 2 are muscle, 2 are fat
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0826 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; all contain gastric mucosa and muscle
|
Unacceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-0926 |
Omentum
|
PAXgene |
1
|
2 pieces; minimal fibrous content
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-1026 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; atrophic cystic ducts and dense fibrous tissue; 1 piece has 20% skeletal muscle content
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-1126 |
Pancreas
|
PAXgene |
1
|
2 pieces; 20% scattered internal fat on both; 30% external fat on 1
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-1226 |
Stomach
|
PAXgene |
1
|
6 pieces; chronic gastritis; no muscle on 3 pieces
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-1326 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces; 10% dermal fat
|
Acceptable
|
 |
GTEX-1GF9X
|
41-50
|
Female
|
GTEX-1GF9X-1426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; well dissected muscle
|
Acceptable
|
 |