GTEX-1PPH7
|
41-50
|
Male
|
GTEX-1PPH7-1926 |
Ileum
|
PAXgene |
2
|
6 pieces; muscularis propria present in all; minimal lymphoid tissue content
|
Unacceptable
|
|
GTEX-1PPH7
|
41-50
|
Male
|
GTEX-1PPH7-2226 |
Coronary artery
|
PAXgene |
1
|
2 pieces; myocardium and fat comprise 90% of area; small arteries & veins present
|
Unacceptable
|
|
GTEX-1PPH8
|
21-40
|
Male
|
GTEX-1PPH8-2126 |
Ileum
|
PAXgene |
2
|
4 pieces, mucosa with moderate-severe autolysis; no target lymphoid aggregates present
|
Unacceptable
|
|
GTEX-1PWST
|
61-70
|
Male
|
GTEX-1PWST-1326 |
Liver
|
PAXgene |
1
|
2 pieces, advanced cirrhosis/steatosis, chronic hepatitis
|
Unacceptable
|
|
GTEX-1PWST
|
61-70
|
Male
|
GTEX-1PWST-1726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, ~30% target muscularis (delineated); majority is fibrotic serosa with chronic inflammation
|
Unacceptable
|
|
GTEX-1PWST
|
61-70
|
Male
|
GTEX-1PWST-2326 |
Ileum
|
PAXgene |
3
|
6 pieces, mucosa completely sloughed, <5% target lymphoid elements
|
Unacceptable
|
|
GTEX-1PWST
|
61-70
|
Male
|
GTEX-1PWST-2726 |
Testis
|
PAXgene |
1
|
2 pieces: epididymis, no seminiferous tubules present
|
Unacceptable
|
|
GTEX-1QAET
|
51-60
|
Male
|
GTEX-1QAET-1626 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; 90% squamous epithelium sloughed
|
Unacceptable
|
|
GTEX-1QAET
|
51-60
|
Male
|
GTEX-1QAET-1726 |
Stomach
|
PAXgene |
3
|
6 pieces; mucosa totally autolyzed; 2 without muscularis
|
Unacceptable
|
|
GTEX-1QCLY
|
21-40
|
Male
|
GTEX-1QCLY-1326 |
Ileum
|
PAXgene |
1
|
6 pieces, mucosa and muscularis; no target lymphoid aggregates in mucosa
|
Unacceptable
|
|
GTEX-1QEPI
|
61-70
|
Female
|
GTEX-1QEPI-1226 |
Coronary artery
|
PAXgene |
1
|
2 pieces; 90% fibrocalcific tissue
|
Unacceptable
|
|
GTEX-1QEPI
|
61-70
|
Female
|
GTEX-1QEPI-2026 |
Stomach
|
PAXgene |
3
|
6 pieces
|
Unacceptable
|
|
GTEX-1QEPI
|
61-70
|
Female
|
GTEX-1QEPI-2326 |
Ileum
|
PAXgene |
3
|
6 pieces; mucosa totally autolyzed; no lymphoid collections; muscularis in all; (resembles colon)
|
Unacceptable
|
|
GTEX-1QEPI
|
61-70
|
Female
|
GTEX-1QEPI-2826 |
Vagina
|
PAXgene |
2
|
6 pieces; mucosa largely sloughed; marked chronic inflammation and reactive atypia in remaining epithelium
|
Unacceptable
|
|
GTEX-1QL29
|
41-50
|
Male
|
GTEX-1QL29-1826 |
Ileum
|
PAXgene |
2
|
5 pieces, < 1% target lymphoid aggregates present
|
Unacceptable
|
|
GTEX-1QMI2
|
61-70
|
Male
|
GTEX-1QMI2-1126 |
Coronary artery
|
PAXgene |
1
|
1 piece, no coronary artery; probably sinus with myocardium/pericardial fat
|
Unacceptable
|
|
GTEX-1QMI2
|
61-70
|
Male
|
GTEX-1QMI2-2426 |
Ileum
|
PAXgene |
3
|
6 pieces, autolyzed mucosa, no target lymphoid aggregates
|
Unacceptable
|
|
GTEX-1QMI2
|
61-70
|
Male
|
GTEX-1QMI2-2926 |
Prostate
|
PAXgene |
2
|
2 pieces, advanced glandular autolysis; by pattern and yellow pigment in autolyzed mucosa (rep ensquared) this is seminal vesicle, not prostate
|
Unacceptable
|
|
GTEX-1QMI2
|
61-70
|
Male
|
GTEX-1QMI2-3226 |
Brain - cerebellum
|
PAXgene |
1
|
2 pieces cerebellum (delineated), 2 pieces cortex
|
Unacceptable
|
|
GTEX-1QP29
|
51-60
|
Male
|
GTEX-1QP29-2626 |
Ileum
|
PAXgene |
2
|
6 pieces; moderately to severely autolyzed mucosa and residual target lymphoid aggregates are about 5-10% of tissue
|
Unacceptable
|
|
GTEX-1QP66
|
51-60
|
Male
|
GTEX-1QP66-0426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces;congested fibrovascular tissue, nerves and fat; target mucosa not present
|
Unacceptable
|
|
GTEX-1QP66
|
51-60
|
Male
|
GTEX-1QP66-0826 |
Ileum
|
PAXgene |
1
|
6 pieces; fibrovascular and adipose tissue, muscularis and nerves; target lymphoid aggregates not present
|
Unacceptable
|
|
GTEX-1QP66
|
51-60
|
Male
|
GTEX-1QP66-1426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; non target vessels with attached 20-25% fat; target nerve not present
|
Unacceptable
|
|
GTEX-1QP66
|
51-60
|
Male
|
GTEX-1QP66-1526 |
Artery - tibial
|
PAXgene |
1
|
4 pieces; multiple cross sections of small vessels with attached fibroadipose tissue and nerves (arrows) and skeletal muscle (outlined); boxed calcification
|
Unacceptable
|
|
GTEX-1QP67
|
41-50
|
Female
|
GTEX-1QP67-0926 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, <50% target muscularis: stroma, squamous mucosa, mucus gland are >50% of specimen
|
Unacceptable
|
|