GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-0926 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, confirmed target muscularis
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1026 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, confirmed target muscularis; trace mucosa/gland, delineated
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1126 |
Pancreas
|
PAXgene |
1
|
2 pieces. Islets relatively well preserved, low-moderate numbers, rep encircled
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1226 |
Stomach
|
PAXgene |
2
|
6 pieces, target mucosa up to ~1mm, variably preserved
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1326 |
Ileum
|
PAXgene |
1
|
6 pieces, target lymphoid aggregates well preserved, up to ~20% tissue, rep delineated
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, target muscoa unusually well-preserved, up to ~0.6mm
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1526 |
Skin, leg
|
PAXgene |
0
|
6 pieces, adherent dermal fat up to ~1mm, rep delineated; squamous epithelium is ~30 microns
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1626 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, fascia/vascular elements ~5-10% of tissue, rep delineated.
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, confirmed target muscularis
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1826 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, trace interstitial fat
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-1926 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, ~60-70% adherent fat/fibrous tissue, only ~30% target peripheral nerve
|
Unacceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PFEY
|
21-40
|
Male
|
GTEX-1PFEY-2026 |
Artery - tibial
|
PAXgene |
0
|
2 pieces adherent nubbins of fat up to ~5mm, minimal atherosis
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0126 |
Skin, leg
|
PAXgene |
0
|
6 pieces; well dissected; <2% dermal fat
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0226 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces; sliver of tendon in 1 piece, 2% of area [arrowed]
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; well trimmed; 5 & 10% internal & external fat
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces; well trimmed, no extraneous tissues; no lesions
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0526 |
Adipose tissue
|
PAXgene |
0
|
2 pieces; 20% fibrous content in 1 piece, 5% in other
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0626 |
Minor salivary glands
|
PAXgene |
0
|
2 pieces; 1 piece is a well dissected gland with no lesions; other piece is 90% skin of lip; LCM
|
Unacceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0726 |
Thyroid gland
|
PAXgene |
0
|
2 pieces; well trimmed; no lesions
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0826 |
Gastroesophageal junction
|
PAXgene |
0
|
6 pieces; up to 40% adventitial stromal content
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-0926 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces; well dissected; mild to moderate squamous hyperplasia with focal lymphoid aggregates consistent with gastric reflux; no submucosal glands
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-1026 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces; well dissected; no lesions
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-1126 |
Stomach
|
PAXgene |
1
|
6 pieces; well dissected, full thickness gastric mucosa and muscularis
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-1226 |
Omentum
|
PAXgene |
0
|
2 pieces; 1 piece with 10% fibrovascular content, other with <1% such content
|
Acceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |
GTEX-1PIGE
|
21-40
|
Male
|
GTEX-1PIGE-1326 |
Ileum
|
PAXgene |
1
|
6 pieces, 5 with abundant lymphoid (target) tissue, but all with full thickness (non-target) muscularis; LCM
|
Unacceptable
|
![View Image View Image](/brd/images/magGlass16x16.png) |