GTEX-13N2G
|
51-60
|
Male
|
GTEX-13N2G-3126 |
Brain - cerebellum
|
PAXgene |
1
|
2 pieces; Purkinje cells present
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0126 |
Atrial appendage
|
PAXgene |
1
|
2 pieces trace adherent fat, delineated
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0226 |
Coronary artery
|
PAXgene |
1
|
2 pieces, ~70% occlusive atherosis (delineated), focally calcified (rep. encircled)
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0326 |
Heart
|
PAXgene |
1
|
2 pieces, mild - moderate interstitial fibrosis, few microinfarcts (delineated)
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0426 |
Skin, leg
|
PAXgene |
0
|
6 pieces, no dermal fat; squamous epithelium is ~40 microns
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0526 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, ~5-10% fascia/vascular elements, rep delineated
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0626 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, ~5% interstitial fat, rep delineated
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0726 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, partial rim of fat on one section ~0.4mm, delineated, generally clean sections
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0826 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, clean sections, no fat
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-0926 |
Lung
|
PAXgene |
2
|
2 pieces, patchy, moderate congestion
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1026 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces gynecomastoid stromal and ductal hyperplasia (rep delineated)
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, lymphocytic/Hashimoto thyroiditis, rep lymphoid aggregates delineated
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1226 |
Aorta
|
PAXgene |
1
|
6 pieces, atherosis up to ~0.8mm, rep delineated
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1326 |
Liver
|
PAXgene |
1
|
2 pieces, micro (mainly) and macrovesicular steatosis involves ~70% parenchyma
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1426 |
Spleen
|
PAXgene |
3
|
2 pieces, marked congestion/autolysis
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1526 |
Gastroesophageal junction
|
PAXgene |
3
|
6 pieces, mucosa present, 20-30% thickness, autolyzed, gastric type, incorrect target
|
Unacceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1626 |
Pancreas
|
PAXgene |
2
|
2 pieces score 2 approaching 3....moderate-focally marked autolysis/saponification. Rare Islets noted (1 delineated), but generally poorly seen.
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1726 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces, mucosa markedly and unusually autolyzed, sloughing, ~ 0.1mm residual, with chronic esophagitis
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1826 |
Esophagus - muscularis
|
PAXgene |
2
|
6 pieces, all muscularis, unusually poorly preserved
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-1926 |
Adrenal glands
|
PAXgene |
3
|
2 pieces, one section is ~60% adherent fat/vessel, delineated. Other may have medualla, but poorly preserved/autolyzed
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-2026 |
Omentum
|
PAXgene |
1
|
2 pieces, minimal vascular/mesothelial tissue
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-2126 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, glomeruli present in all sections, some areas approach score 2 for autolysis, better preserved than typical
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-2226 |
Ileum
|
PAXgene |
3
|
3 pieces, ~50-60% lymphoid aggregates; mucosal elements largely sloughed/autolyzed
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-2326 |
Stomach
|
PAXgene |
3
|
6 pieces, mucosa (~0.8mm) up to 20-25% thickness but glandular elements markedly autolyzed except for deeper areas
|
Acceptable
|
|
GTEX-13NZ9
|
51-60
|
Male
|
GTEX-13NZ9-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces mucosa ~ 0.3mm, ~15-20% thickness, but markedly autolyzed glands, largely lamina propria remains
|
Acceptable
|
|