GTEX-YBZK
|
51-60
|
Female
|
GTEX-YBZK-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces , ~13x4mm : all have residual subcutaneous adipose tissue up to 2mm in thickness; skin is up to 3.5mm thick
|
Acceptable
|
 |
GTEX-YBZK
|
51-60
|
Female
|
GTEX-YBZK-0526 |
Adipose tissue
|
PAXgene |
1
|
2 pieces ~19x12mm ; predominantly intact with minimal fibrous tissue; large vessels present in aliquots.
|
Acceptable
|
 |
GTEX-YEC3
|
51-60
|
Male
|
GTEX-YEC3-0526 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 8.5x1.5mm; adherent fibrous/vasa vasorum in several up to ~0.5mm thick, minimal atherosis on luminal side
|
Acceptable
|
 |
GTEX-YEC3
|
51-60
|
Male
|
GTEX-YEC3-0726 |
Heart
|
PAXgene |
1
|
2 pieces, 11x7 and 9x7mm; penetrating coronary artery branches in both, ~2x0.6mm, delineated patchy interesitial fibrosis
|
Acceptable
|
 |
GTEX-YECK
|
61-70
|
Male
|
GTEX-YECK-2326 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, up to 8x3mm, glomeruli present in all sections
|
Acceptable
|
 |
GTEX-YF7O
|
51-60
|
Male
|
GTEX-YF7O-2226 |
Minor salivary glands
|
PAXgene |
1
|
3 pieces, from 7.5x2 to 9x8mm; glands are 5 to 50% in the 3 pieces; too much skin in sample
|
Acceptable
|
 |
GTEX-YF7O
|
51-60
|
Male
|
GTEX-YF7O-2426 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 12x8.5 and 12x9mm; fibrofatty tissue in one, skin and fatty tissue in other
|
Acceptable
|
 |
GTEX-YFC4
|
41-50
|
Female
|
GTEX-YFC4-1126 |
Lung
|
PAXgene |
1
|
2 pieces, prominent centeral vessels in one, delineated. Both with moderate alveolar congestion/edema
|
Acceptable
|
 |
GTEX-YFC4
|
41-50
|
Female
|
GTEX-YFC4-1926 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, glomeruli noted in all, modeately autolyzed
|
Acceptable
|
 |
GTEX-YFCO
|
41-50
|
Male
|
GTEX-YFCO-1126 |
Omentum
|
PAXgene |
1
|
2 pieces; central hole in one piece; few small vessels.
|
Acceptable
|
 |
GTEX-YFCO
|
41-50
|
Male
|
GTEX-YFCO-1326 |
Ileum
|
PAXgene |
1
|
6 pieces; muscularis propria present in several pieces (not target); lymphoid elements prominent in several pieces (marked).
|
Acceptable
|
 |
GTEX-YFCO
|
41-50
|
Male
|
GTEX-YFCO-2026 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; central holes in both; 5-10% fibrous tissue.
|
Acceptable
|
 |
GTEX-YJ89
|
51-60
|
Male
|
GTEX-YJ89-0626 |
Testis
|
PAXgene |
1
|
2 pieces; spermatogenesis present, medial calcific sclerosis in one vessel
|
Acceptable
|
 |
GTEX-YJ89
|
51-60
|
Male
|
GTEX-YJ89-1726 |
Pancreas
|
PAXgene |
2
|
2 pieces; fibrosis with reduction in number of islets
|
Acceptable
|
 |
GTEX-YJ8A
|
21-40
|
Male
|
GTEX-YJ8A-0326 |
Pancreas
|
PAXgene |
0
|
2 pieces; 10-20% internal fibroadipose; focal hemorrhages in ducts
|
Acceptable
|
 |
GTEX-YJ8A
|
21-40
|
Male
|
GTEX-YJ8A-2126 |
Ileum
|
PAXgene |
1
|
4 pieces; 3 small lymphoid nodules in 2 pieces
|
Acceptable
|
 |
GTEX-YJ8O
|
21-40
|
Female
|
GTEX-YJ8O-0126 |
Coronary artery
|
PAXgene |
1
|
2 pieces, ~30% occlusive atherosis in one, adherent fat up to ~0.5mm on one, delineated
|
Acceptable
|
 |
GTEX-YJ8O
|
21-40
|
Female
|
GTEX-YJ8O-0626 |
Stomach
|
PAXgene |
1
|
6 pieces, mucosa up to ~1mm thick in areas; generally well preserved but approach a '2' in some foci
|
Acceptable
|
 |
GTEX-YJ8O
|
21-40
|
Female
|
GTEX-YJ8O-2726 |
Artery - tibial
|
PAXgene |
0
|
2 pieces with additional minute fragments of fat/fibrous tissue, ensquared (avoid); fairly clean specimens, one a section through a bifurcation in the artery
|
Acceptable
|
 |
GTEX-YJ8O
|
21-40
|
Female
|
GTEX-YJ8O-2826 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, ~5-10% interstitial foci of fat and vessels in each, but good specimens
|
Acceptable
|
 |
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-0826 |
Omentum
|
PAXgene |
1
|
2 pieces, trace vascular structures in one, rep area delineated
|
Acceptable
|
 |
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1426 |
Minor salivary glands
|
PAXgene |
1
|
3 pieces, gland components range from 90% to 20%, delineated in all 3, focally contaminating squamous mucosa and stroma
|
Acceptable
|
 |
GTEX-Z9EW
|
41-50
|
Male
|
GTEX-Z9EW-1526 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, contaminating 'floaters' of small bowel mucosa present in block, delineated rep areas.
|
Acceptable
|
 |
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0826 |
Stomach
|
PAXgene |
0
|
6 pieces, beautifully preserved, mucosa up to 1mm thick in all, 80-100% thickness
|
Acceptable
|
 |
GTEX-ZA64
|
21-40
|
Male
|
GTEX-ZA64-0926 |
Omentum
|
PAXgene |
1
|
2 pieces, few small vessels, delineated, incidental omental lymph node in one, ensquared
|
Acceptable
|
 |