GTEX-1M4P7
|
61-70
|
Male
|
GTEX-1M4P7-2526 |
Testis
|
PAXgene |
2
|
2 pieces, moderately advanced autolysis
|
Acceptable
|
|
GTEX-1M4P7
|
61-70
|
Male
|
GTEX-1M4P7-2626 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, fibroadipose elements only
|
Acceptable
|
|
GTEX-1M4P7
|
61-70
|
Male
|
GTEX-1M4P7-2726 |
Brain - cortex
|
PAXgene |
1
|
4 pieces, no abnormalities
|
Acceptable
|
|
GTEX-1M4P7
|
61-70
|
Male
|
GTEX-1M4P7-2826 |
Brain - cerebellum
|
PAXgene |
1
|
4 pieces (fragmented) no abnormalities
|
Acceptable
|
|
GTEX-1M4P7
|
61-70
|
Male
|
GTEX-1M4P7-2926 |
Pituitary gland
|
PAXgene |
1
|
1 piece, ~3x1mm nubbin of neurohypophysis; rest is adenohypophysis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0126 |
Spleen
|
PAXgene |
0
|
2 pieces; both include portion of capsule (target is 5mm below capsule)
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0226 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces; well trimmed, few include trivial component of fat (<10%)
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; vague/early nodularity, focal cystic change
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0426 |
Omentum
|
PAXgene |
1
|
2 pieces; mature adipose tissue, small (<10%) component of nerve and vessels
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0526 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; target muscularis, residual attached fat/vessels on 4 of 6
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; target muscularis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0726 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0826 |
Stomach
|
PAXgene |
2
|
6 pieces; full thickness sections; mild gastritis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-0926 |
Pancreas
|
PAXgene |
1
|
2 pieces; both include internal and attached fat, up to 50% in one piece, mild fibrosis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1026 |
Heart
|
PAXgene |
1
|
2 pieces; interstitial and focal patchy fibrosis
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1126 |
Coronary artery
|
PAXgene |
1
|
2 pieces; one is disrupted due to calcific atherosclerosis, 2nd is 25-50% occluded with plaque and has partial rim of fat (1.5mm)
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1226 |
Skin, leg
|
PAXgene |
1
|
6 pieces; includes up to ~10% attached and internal fat, epidermis measures
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces; both include ~20 internal fat
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1426 |
Prostate
|
PAXgene |
2
|
2 pieces; 1 piece is glands with sloughed epithelium admixed with stroma, 2nd is ~20% glands/stroma, majority is surrounding fat/vessels/ganglion
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1526 |
Aorta
|
PAXgene |
1
|
6 pieces; minimal plaque
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1626 |
Atrial appendage
|
PAXgene |
1
|
3 pieces; interstitial fibrosis and hypertrophy, 1 piece includes focus of lymphocytes and ~40% fat
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1726 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; 5 and 20% fat, predominantly cortex
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1826 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; end stage renal disease, c/w history of hypertension, diabetes, and lupus
|
Unacceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1926 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; include from 10-30% largely internal fat
|
Acceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-2026 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; atherosclerosis with luminal compromise >50%, medial calcific sclerosis
|
Acceptable
|
|