GTEX-1LSVX
|
61-70
|
Male
|
GTEX-1LSVX-1626 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces; several pieces have large amounts of medulla
|
Unacceptable
|
|
GTEX-1LSVX
|
61-70
|
Male
|
GTEX-1LSVX-1826 |
Ileum
|
PAXgene |
3
|
6 pieces; autolyzed mucosa with minimal lymphoid tissue; specimens have full thickness of ileal wall
|
Unacceptable
|
|
GTEX-1LSVX
|
61-70
|
Male
|
GTEX-1LSVX-2226 |
Stomach
|
PAXgene |
2
|
6 pieces; no muscularis propria present
|
Unacceptable
|
|
GTEX-1LSVX
|
61-70
|
Male
|
GTEX-1LSVX-2326 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces; <1mm salivary gland; remainder is lip and connective tissue
|
Unacceptable
|
|
GTEX-1LVA9
|
51-60
|
Male
|
GTEX-1LVA9-1426 |
Pancreas
|
PAXgene |
3
|
2 pieces; severely autolyzed pancreas
|
Unacceptable
|
|
GTEX-1LVA9
|
51-60
|
Male
|
GTEX-1LVA9-1526 |
Ileum
|
PAXgene |
3
|
2 pieces; moderately to severely autolyzed, but with significant lymphoid component in 5 of 6 pieces, one piece is muscularis only
|
Unacceptable
|
|
GTEX-1LVA9
|
51-60
|
Male
|
GTEX-1LVA9-1926 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; moderately autolyzed, include significant portion of medulla
|
Unacceptable
|
|
GTEX-1LVA9
|
51-60
|
Male
|
GTEX-1LVA9-2326 |
Stomach
|
PAXgene |
2
|
6 pieces; predominantly muscularis, only 1 piece includes a small strip of mucosa
|
Unacceptable
|
|
GTEX-1LVAM
|
41-50
|
Female
|
GTEX-1LVAM-1526 |
Ileum
|
PAXgene |
1
|
6 pieces, muscularis, no target mucosa or lymphoid aggregates
|
Unacceptable
|
|
GTEX-1LVAO
|
61-70
|
Male
|
GTEX-1LVAO-1526 |
Pancreas
|
PAXgene |
3
|
2 pieces; 50% fat internal content
|
Unacceptable
|
|
GTEX-1LVAO
|
61-70
|
Male
|
GTEX-1LVAO-2426 |
Stomach
|
PAXgene |
3
|
6 pieces; tissue totally autolyzed
|
Unacceptable
|
|
GTEX-1LVAO
|
61-70
|
Male
|
GTEX-1LVAO-2526 |
Ileum
|
PAXgene |
1
|
6 pieces; thin band [0.2mm] of lymphoid tissue along autolyzed mucosal edge of several samples; muscularis propria present; LCM
|
Unacceptable
|
|
GTEX-1M4P7
|
61-70
|
Male
|
GTEX-1M4P7-0326 |
Adipose tissue
|
PAXgene |
0
|
3 pieces, ~25-30% fat, mainly fascia/vascular elements
|
Unacceptable
|
|
GTEX-1M4P7
|
61-70
|
Male
|
GTEX-1M4P7-1826 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces, no residual target mucosa
|
Unacceptable
|
|
GTEX-1M4P7
|
61-70
|
Male
|
GTEX-1M4P7-2126 |
Ileum
|
PAXgene |
3
|
6 pieces, only trace lymphoid aggregates
|
Unacceptable
|
|
GTEX-1M5QR
|
41-50
|
Male
|
GTEX-1M5QR-1826 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; end stage renal disease, c/w history of hypertension, diabetes, and lupus
|
Unacceptable
|
|
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-0126 |
Thyroid gland
|
PAXgene |
0
|
2 pieces, not thyroid; normal thymus
|
Unacceptable
|
|
GTEX-1MA7W
|
21-40
|
Female
|
GTEX-1MA7W-1726 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, not single artery but aggregate of smaller twigs
|
Unacceptable
|
|
GTEX-1MA7X
|
61-70
|
Male
|
GTEX-1MA7X-0226 |
Coronary artery
|
PAXgene |
1
|
2 pieces; 1 with small vessel and over 90% fat; other is all fat and myocardium
|
Unacceptable
|
|
GTEX-1MA7X
|
61-70
|
Male
|
GTEX-1MA7X-1126 |
Pancreas
|
PAXgene |
3
|
2 pieces; 1 with 40% external fat; tissue dissociated
|
Unacceptable
|
|
GTEX-1MA7X
|
61-70
|
Male
|
GTEX-1MA7X-1326 |
Adrenal glands
|
PAXgene |
1
|
2 pieces of fat without any adrenal tissue
|
Unacceptable
|
|
GTEX-1MA7X
|
61-70
|
Male
|
GTEX-1MA7X-2426 |
Brain - cerebellum
|
PAXgene |
1
|
4 pieces; 2 are cerebellum; 2 resemble cortex
|
Unacceptable
|
|
GTEX-1MCC2
|
21-40
|
Female
|
GTEX-1MCC2-1526 |
Ileum
|
PAXgene |
2
|
4 pieces; mildly to moderately autolyzed mucosa with three small lymphoid aggregates (outlined) representing less than 10% of tissue
|
Unacceptable
|
|
GTEX-1MCC2
|
21-40
|
Female
|
GTEX-1MCC2-1726 |
Stomach
|
PAXgene |
1
|
6 pieces; only muscularis with attached serosa; no target mucosa
|
Unacceptable
|
|
GTEX-1MCQQ
|
51-60
|
Male
|
GTEX-1MCQQ-0926 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; full thickness esophageal wall with mucosa
|
Unacceptable
|
|