GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 9x4mm; Mucosa delineated in one aliquot, ~10% thickness but badly autolyzed
|
Acceptable
|
 |
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1326 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, ~7x4mm, up to ~50% muscularis in 5 sections, one with no muscle
|
Acceptable
|
 |
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-0426 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, 18x11 & 19x17mm; both encased in adipose up to 50% of area
|
Acceptable
|
 |
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 10x9 & 8x8mm; focal skeletal muscle in both aliquots up to ~2x1mm, delineated
|
Acceptable
|
 |
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0426 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 8x2.5mm; 1 piece without epidermis (in this cut). most subcutaneous adipose trimmed
|
Acceptable
|
 |
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0926 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 7x3mm; 1 of 6 without epidermis [in this section; could be on another surface]
|
Acceptable
|
 |
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1726 |
Spleen
|
PAXgene |
1
|
2 pieces, 9.5x9 & 9x8mm; lymphoid tissue better preserved than in ileum
|
Acceptable
|
 |
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 8x8 & 9x8mm; 1 piece is all adipose with 40% empty central hole. other piece has several ducts in fibrous stroma, remainder adipose
|
Acceptable
|
 |
GTEX-XUJ4
|
61-70
|
Female
|
GTEX-XUJ4-0526 |
Heart
|
PAXgene |
1
|
2 pieces, 9.5x8 & 11x8mm; 2 mm subacute infarct, delineated, in one aliquot
|
Acceptable
|
 |
GTEX-XUJ4
|
61-70
|
Female
|
GTEX-XUJ4-1126 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 11x6mm; all mscularis, good specimens; focal submucosal glands in several sections, delineated
|
Acceptable
|
 |
GTEX-XUJ4
|
61-70
|
Female
|
GTEX-XUJ4-1926 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces, 13x8 & 13x12.5mm; 5mm focus apocrine metaplasia in one section, fibrosystic change
|
Acceptable
|
 |
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-0226 |
Uterus
|
PAXgene |
0
|
2 pieces, 9x6 & 9x9mm; no endometrium, only myometrium (in these sections)
|
Acceptable
|
 |
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-0726 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 2x2 & 3x1mm; intimal fibrosis and in one, focal calcification
|
Acceptable
|
 |
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-1426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x3mm; well dissected; surface sloughing, severe in 1 piece
|
Acceptable
|
 |
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-1826 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 9x4mm. Well trimmed muscularis except for up to 1 mm submucosa in all.
|
Acceptable
|
 |
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-2326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 12x6.5 & 9x9mm. Ducts and lobules with apocrine change in 1 piece. Fibrocystic change. 90% adipose in other piece.
|
Acceptable
|
 |
GTEX-XV7Q
|
41-50
|
Female
|
GTEX-XV7Q-0326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 14x9 & 15x13mm; ~1mm parathyroid gland embedded in one aliquot, delineated
|
Acceptable
|
 |
GTEX-XV7Q
|
41-50
|
Female
|
GTEX-XV7Q-1326 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 10x2mm; ~ up to ~30-70% mucosa in thickness, variably preserved
|
Acceptable
|
 |
GTEX-XV7Q
|
41-50
|
Female
|
GTEX-XV7Q-2826 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, 5x4 & 6x5mm; clean specimens; Monckeberg's medial sclerosis in both
|
Acceptable
|
 |
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-0226 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 3x2 & 2.5x2mm; 70% occlussive atherosclerosis in both, focally calcified, delineated. Adherent nubbins of fat up to 2mm, encircled. Sample with caution
|
Acceptable
|
 |
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-0726 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 8.5x3mm; adherent serosa/vasa vasorum in 3 ~0.5mm thick
|
Acceptable
|
 |
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-2026 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 10x6 & 10x9mm; 4x2.5mm focus of fat in one section
|
Acceptable
|
 |
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-0226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 14x12 & 11x10mm; muscle content <50% in one due to fibroadipose interstitium; muscle 70% in other
|
Acceptable
|
 |
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-0426 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 10x2mm; up to 1.8 mm adventitial adipose in 3 pieces
|
Acceptable
|
 |
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-1626 |
Uterus
|
PAXgene |
1
|
2 pieces, 8x8 & 8x7mm; 1 has 3 areas of endometrium cut obliquely; other is only myometrium in this section
|
Acceptable
|
 |