GTEX-1K2DU
|
21-40
|
Male
|
GTEX-1K2DU-2226 |
Testis
|
PAXgene |
2
|
2 pieces; moderately advanced autolysis; spermatogenesis appears reduced
|
Acceptable
|
 |
GTEX-1K2DU
|
21-40
|
Male
|
GTEX-1K2DU-2326 |
Skin, leg
|
PAXgene |
0
|
6 pieces, minimal dermal fat; squamous epithelium is ~60 microns
|
Acceptable
|
 |
GTEX-1K2DU
|
21-40
|
Male
|
GTEX-1K2DU-2426 |
Adipose tissue
|
PAXgene |
0
|
2 pieces; fascia is ~5% tissue; rep delineated
|
Acceptable
|
 |
GTEX-1K2DU
|
21-40
|
Male
|
GTEX-1K2DU-2526 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces adherent;interstitital fat is ~10% of tissue; rep delineated
|
Acceptable
|
 |
GTEX-1K2DU
|
21-40
|
Male
|
GTEX-1K2DU-2626 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces; nubbin of;adherent fat/fibrous tissue up to ~0.2mm, delineated
|
Acceptable
|
 |
GTEX-1K2DU
|
21-40
|
Male
|
GTEX-1K2DU-2726 |
Artery - tibial
|
PAXgene |
0
|
1 piece, correlates with -2725, longitudinal section of muscular artery.
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0126 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, 3 large, 3 small; well trimmed; <5% dermal fat
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0226 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; gynecomastoid features: fibrous stroma and ducts, 10% fat
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0326 |
Lung
|
PAXgene |
1
|
2 pieces; moderate vascular congestion, alveolar hemorrhages and pigmented macrophages
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0426 |
Thyroid gland
|
PAXgene |
2
|
2 pieces; 5% fat at edge of 1 piece
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0526 |
Esophagus - muscularis
|
PAXgene |
2
|
6 pieces; up to 20% external fibrofatty content
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; well dissected; only 1 small extraneous submucosal gland
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0726 |
Liver
|
PAXgene |
2
|
2 pieces; moderate centrilobular congestion with mild centrilobular macrovesicular steatosis
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0826 |
Omentum
|
PAXgene |
1
|
2 pieces; scattered empty spaces, possibly due to manual compression
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-0926 |
Pancreas
|
PAXgene |
1
|
2 pieces; <5% external fat
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1026 |
Spleen
|
PAXgene |
2
|
2 pieces; moderate to severe red pulp vascular congestion
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1126 |
Stomach
|
PAXgene |
3
|
6 pieces; autolyzed mucosa only, no muscularis
|
Unacceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1226 |
Prostate
|
PAXgene |
2
|
2 pieces, 1 with well preserved acini and periurethral ducts; the other has severely autolyzed glands and intact stroma
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1326 |
Ileum
|
PAXgene |
1
|
6 pieces; only 2 small lymphoid nodules in mucosa; full thickness of wall sampled
|
Unacceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; mucosal autolysis varies from moderate to severe, muscularis from slight to moderate
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1526 |
Adrenal glands
|
PAXgene |
2
|
2 pieces: 1 with 80% fat
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1626 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces: 5 are cortex, 1 is medulla [labeled]; no sign of active or chronic lesions; glomeruli well preserved, tubules moderately to severely autolyzed
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1726 |
Gastroesophageal junction
|
PAXgene |
2
|
6 muscular pieces, 5 large, 1 small, plus 3 small nonmuscular fragments
|
Acceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1826 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces; no salivary gland tissue; skin, muscle, fat , blood vessels, stroma
|
Unacceptable
|
 |
GTEX-1KAFJ
|
51-60
|
Male
|
GTEX-1KAFJ-1926 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; full thickness sampled
|
Unacceptable
|
 |