GTEX-1JN6P
|
61-70
|
Male
|
GTEX-1JN6P-2726 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces; 3 have all muscularis (1 with 0.3mm squamous carry-over-labeled), 2 have 30% muscle, remainder fat and stroma; 1 has no muscle, all stroma
|
Acceptable
|
 |
GTEX-1JN6P
|
61-70
|
Male
|
GTEX-1JN6P-2826 |
Testis
|
PAXgene |
2
|
2 pieces; active spermatogenesis
|
Acceptable
|
 |
GTEX-1JN6P
|
61-70
|
Male
|
GTEX-1JN6P-2926 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; hair-bearing skin with up to 6 hair follicles per piece; up to 40% dermal fat
|
Acceptable
|
 |
GTEX-1JN6P
|
61-70
|
Male
|
GTEX-1JN6P-3026 |
Brain - cortex
|
PAXgene |
1
|
4 pieces
|
Acceptable
|
 |
GTEX-1JN6P
|
61-70
|
Male
|
GTEX-1JN6P-3126 |
Brain - cerebellum
|
PAXgene |
2
|
4 pieces
|
Acceptable
|
 |
GTEX-1JN6P
|
61-70
|
Male
|
GTEX-1JN6P-3226 |
Pituitary gland
|
PAXgene |
1
|
1 piece; neural tissue comprises <5%
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0126 |
Spleen
|
PAXgene |
0
|
2 pieces; capsule is present on 1 piece, some congestion
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0226 |
Adrenal glands
|
PAXgene |
1
|
2 pieces; both include small attachment of fat, predominantly cortex with small portion of medulla in 1 piece
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0326 |
Pancreas
|
PAXgene |
1
|
2 pieces; includes up to 10% attached and internal fat, islets well visualized, mild intralobular fibrosis, focal PanIN-1B
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0426 |
Lung
|
PAXgene |
1
|
2 pieces; organizing bronchopneumonia, bronchial smooth muscle hypertrophy and increased mucosal goblet cells (suggestive of asthma)
|
Unacceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0526 |
Gastroesophageal junction
|
PAXgene |
0
|
6 pieces; target muscularis
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0626 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces; parakeratosis with focal superficial exudate with possible fungal organisms; squamous hyperplasia (possible reflux)
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0726 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces; target muscularis
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0826 |
Stomach
|
PAXgene |
1
|
6 pieces; variable representation of mucosa, submucosa, muscularis; multiple erosions, dilated deep glands
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-0926 |
Aorta
|
PAXgene |
1
|
6 pieces; atherosclerosis
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1026 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; includes up to ~10% mostly attached fat
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1126 |
Omentum
|
PAXgene |
1
|
2 pieces; predominantly fat, but with several larger vessels and portion of muscularis
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1226 |
Prostate
|
PAXgene |
1
|
2 pieces; prostatitis
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1326 |
Testis
|
PAXgene |
1
|
2 pieces; spermatogenesis is present, focal hyalinization of tubules
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1426 |
Ileum
|
PAXgene |
1
|
6 pieces; mucosa and submucosa with only focal lymphoid tissue (1 of 6 pieces)
|
Unacceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1526 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; both include ~10% fat/vessels/connective tissue, mild to moderate autolysis
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1626 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; predominantly target muscularis with portions of residual attached submucosa and mucosa
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1726 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; predominantly fibrocollagenous stroma with scattered ducts, minor component of fat
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1826 |
Skin, leg
|
PAXgene |
1
|
6 pieces; well trimmed with <10% attached and internal fat, epidermis measures 26 microns
|
Acceptable
|
 |
GTEX-1K2DA
|
51-60
|
Male
|
GTEX-1K2DA-1926 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; 30-60% fat and epineurium
|
Acceptable
|
 |